Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M19
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.46
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 27 3.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 5.7
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 26 5.7
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 7.5
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 7.5
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.5
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 7.5
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 25 9.9
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.46
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = +1
Query: 244 VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDNGEGGFWVSYEDP 420
V L+SYP++ ++ + + +LR++N P + F +A P E GF+V D
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873
Query: 421 DT----AGNKASYVKTKNLGGVSI-MDLSMD 498
+T A +AS+ +N + + + +SMD
Sbjct: 1874 ETQELFAIRRASFAGRRNDDSIRLSLRISMD 1904
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 537 DRIFISSAKTTKIIHGKVHDGHTAKVLCFHVTSF 436
D +F + T ++H K G T V+C ++ +F
Sbjct: 114 DALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAF 147
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 119 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 208
PT L SA DVR +S + +FH+Y+
Sbjct: 51 PTELKARTSATFDVRSASTSPINASDFHKYS 81
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 37 PIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 189
P PQ+ + +QN + + + G P K V+ + T DSDS++S
Sbjct: 777 PESPPQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 461 TLAVCPSWTFPWMIFVVFALEINIRSWGPQNTDFKLFLY 577
T+A + T+ W+ F +F L NI W P + LF +
Sbjct: 176 TMAKSGTETYQWVGFFIFWLLSNIAIWFPVHQIRHLFTF 214
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +1
Query: 79 DAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPP-----IHADXGGEAGPYTK 243
+ A YWI+ T + +LG S + + + IS + P H+ G GP TK
Sbjct: 792 EKATTYWIKGTEFTVERLLGYSNEAQRF-VGGSICISRLAPQDYHRFHSPVNGCIGPITK 850
Query: 244 VQG 252
++G
Sbjct: 851 IEG 853
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 7.5
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Frame = +1
Query: 133 LGISTTGRTWKLDSDSEISGVPPIHADX------GGEAGPYTKVQGLLSYPEICAKLINP 294
LG+S G+T+ L S+ GV + D G EA P T V+ L S E C K++
Sbjct: 93 LGVSGAGKTYTLFGPSDRPGVAFLALDALFYAIKGREASPQT-VEFLRSQLEKC-KIVEA 150
Query: 295 NQ--NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYED 417
++ G+ P KV + ++ + ++ ++ + N + ++S+ +
Sbjct: 151 SKFLRGEAPLDIKVPN-TEYYASHFPKIEEKNYQYAIYLSFAE 192
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 415 LRKKPRSHLHHYHQEGGRHRS 353
LR + H H YH++ G+++S
Sbjct: 1190 LRVPQKKHKHFYHRDDGKYKS 1210
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 577 IEKKFKVGILRPPGSDIYLQCKD 509
+ +KFKVG+ PP +D+ + D
Sbjct: 1098 LPRKFKVGVAAPPYNDVDVYTND 1120
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 202 IHADXGGEAGPYTKVQGLLSY 264
+H G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,167
Number of Sequences: 5004
Number of extensions: 66156
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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