Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M19
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       40   0.002
11_04_0234 + 15187065-15188241,15188316-15188494                       39   0.003
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507...    29   3.4  
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    29   4.5  
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924...    29   4.5  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    28   5.9  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 37/164 (22%), Positives = 65/164 (39%)
 Frame = +1

Query: 10  NPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEIS 189
           N     + AP+Y   +R    +A   +  W+  G P  K+V+GI   GR+W L + +   
Sbjct: 242 NANATAFDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSG 298

Query: 190 GVPPIHADXGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFR 369
              P+ A    + G  +   G +SY E+   L      G R  +   ++ S    +Y   
Sbjct: 299 VGAPVVAAGPKQRG--SNATGAMSYAEV-QWLAATATRGSRAVITAYDNAS--VASYV-- 351

Query: 370 LPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDD 501
                  G  WV+++       K ++     L G  +  ++ DD
Sbjct: 352 -----SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDD 390


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 1/166 (0%)
 Frame = +1

Query: 7   RNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL-DSDSE 183
           +N       AP+Y   ++D   +A   +  W+  G P  KLV+GI   GR+W L + D  
Sbjct: 240 KNSNVTTADAPLY---DKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKN 296

Query: 184 ISGVPPIHADXGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYA 363
             G P   A  G +     ++ G+++Y EI   L       K   +   +D ++    Y 
Sbjct: 297 GLGAPT--AAAGTKQRKSNQI-GVIAYAEIEEYL-------KSQSVFVTHD-NQSVADYF 345

Query: 364 FRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDD 501
           +        G  WVS++       K  +V    L G  +  +S DD
Sbjct: 346 Y-------SGDLWVSFDSAVVVQEKVEFVAKSQLLGYFLSTISFDD 384


>03_05_1021 -
           29750155-29750220,29750342-29750428,29750614-29750799,
           29750965-29751059,29751179-29751284,29751378-29751452,
           29751548-29751679,29751782-29751961,29752371-29752567,
           29752651-29752906
          Length = 459

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 127 LVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEICAK 282
           LV+G   +  T  L    E+SG+P    D     GP  K+   L++ E+  K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416


>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 62  ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 172
           ++Y +PT++ + GF   +    LSLV+A L+  GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329


>01_02_0015 +
           10191793-10191957,10192085-10192229,10192331-10192419,
           10193009-10193063,10193607-10193692,10194006-10194065
          Length = 199

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 415 DPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDK-YPILGAAKYRL 561
           D +  G  A  +     G   ++  ++D+FR LCTGDK Y   G + +R+
Sbjct: 71  DVEVGGEPAGRIVIGLFG--EVVPKTVDNFRALCTGDKGYGYKGCSFHRI 118


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 409 KKPRSHLHHYHQEGGRHR 356
           ++P+SH HH+H  G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,716
Number of Sequences: 37544
Number of extensions: 450194
Number of successful extensions: 1247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)