Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M19
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 88  INYWIQNGAPTHKLVLGIST--TGRTWKLDSDSEISGV 195
           +++WI   A + ++ LGI+T  T  T  LDS +++  V
Sbjct: 264 VSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKV 301


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 405  NPEATFTIIIRKAEGIGPKTFARIVDLTKMRTLSV 301
            +P  T TII  +    GP T  R+ DL +  TL V
Sbjct: 962  DPSDTVTIITAEEAPSGPPTSIRVDDLDQ-HTLKV 995


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 88  INYWIQNGAPTHKLVLGIST 147
           +++WI + A + ++ LGI+T
Sbjct: 261 VSFWINHEATSARVALGITT 280


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 4   ERNPKEADYTAPIYAPQN 57
           E++PK+   T P  APQN
Sbjct: 306 EKDPKKMPCTQPPSAPQN 323


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 395  ASGFLTKILTRPETKLVT*KQRTLAVCPS 481
            ++ F +K++TRP+T       + +AV P+
Sbjct: 1136 STSFDSKVMTRPDTDSENWTPKMMAVEPT 1164


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 166 LDSDSEISGVPPIHADXGGEAGPYTKVQGL 255
           +  D  + G+ P+H   G   GP    +G+
Sbjct: 53  IPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,792
Number of Sequences: 438
Number of extensions: 4841
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)