Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M18
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159     32   0.41 
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034...    31   0.71 
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565...    29   3.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.8  
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369...    28   5.0  
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638...    28   5.0  
01_06_1701 - 39290537-39291077,39292110-39292801                       28   5.0  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    27   8.8  

>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
          Length = 400

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 244 SPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQSLKS 363
           +PS GS   S+P  SPTP P+PLT   ++ A   + + KS
Sbjct: 155 TPSQGSLAMSSPSPSPTP-PSPLTPAPATTAPAPTPTAKS 193


>01_06_1428 -
           37301697-37302175,37302300-37302471,37302570-37303403,
           37303847-37304012,37304334-37304573,37304765-37304905,
           37305623-37305735,37306549-37306614,37307242-37307480,
           37307615-37307897
          Length = 910

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 362 DLSDWEVSTAGLESFLVSGVGHGVGDSIG 276
           DLSD + S AG+E F+     HGVG SIG
Sbjct: 831 DLSDLQ-SKAGVEEFVCCATVHGVGPSIG 858


>03_05_0845 -
           28155065-28155374,28156201-28156342,28156375-28156505,
           28156591-28156784,28156859-28156969,28157234-28157399,
           28157501-28157668,28157766-28158787
          Length = 747

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 249 VSGQFSYVGPDGVTYSVTYTAD 314
           + GQ  +VGPDG TY   + AD
Sbjct: 96  IEGQGVFVGPDGATYRGAWAAD 117


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 244 SPSAGSSLTSAPMESPTP*PTPLTRKDS-SPAVLTSQSLKSPYRIQ 378
           S  A ++++S P  SP+P P P  R  S SP++      +SP R Q
Sbjct: 256 STPAITAVSSVPRSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQ 301


>11_04_0359 +
           16735204-16735676,16736597-16736647,16736860-16736934,
           16737011-16737062,16737147-16737280,16737397-16737511,
           16737665-16737751,16737855-16737903,16738351-16738435,
           16738641-16738715,16738848-16739029,16739905-16739969
          Length = 480

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +1

Query: 244 SPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQ 351
           SPS  SSLT  P  SP   P   TR   S A+L S+
Sbjct: 110 SPSPMSSLTPTPPFSPITVPAAATRHCRSAALLLSR 145


>02_04_0113 -
           19861904-19862197,19862338-19862496,19862580-19863833,
           19864086-19864124
          Length = 581

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 478 PIYVLVTKKKKKNSRSTVSISLISNSARGADMSSKRVYLCNLWI 609
           P  + VT   K NS   +  S++S++ R    +   +YLC+L++
Sbjct: 51  PQEIKVTILSKLNSLDAIRASILSSAWRNVWTTLPEIYLCDLYL 94


>01_06_1701 - 39290537-39291077,39292110-39292801
          Length = 410

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 289 PTP*PTPLTRKDSSPAVLTSQSLKSPYR 372
           PTP P P +R+ S P   T+    +PYR
Sbjct: 85  PTPPPRPHSRRASEPPPATANGGSAPYR 112


>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 434 LITTDY--IKVRRMSIFGLDVWIL*GDLSDWEVSTAGLESFLVS 309
           LIT+D   + +R++ +     W     L+DWE+ T G  +FLVS
Sbjct: 204 LITSDVSNLDLRKVKVEVSKFW----KLTDWEIRTEGRHNFLVS 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,450,272
Number of Sequences: 37544
Number of extensions: 243491
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)