Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M18
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot... 31 0.60
At1g15280.2 68414.m01829 glycine-rich protein 30 1.0
At1g15280.1 68414.m01828 glycine-rich protein 30 1.0
At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9) i... 29 1.8
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 5.6
At3g19170.1 68416.m02434 peptidase M16 family protein / insulina... 28 5.6
At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family pr... 27 7.4
At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family pr... 27 7.4
At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family pr... 27 7.4
At1g17120.1 68414.m02086 amino acid permease family protein low ... 27 7.4
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family... 27 9.7
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 9.7
At1g72640.1 68414.m08399 expressed protein 27 9.7
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 9.7
At1g49630.3 68414.m05566 peptidase M16 family protein / insulina... 27 9.7
At1g49630.2 68414.m05565 peptidase M16 family protein / insulina... 27 9.7
At1g49630.1 68414.m05564 peptidase M16 family protein / insulina... 27 9.7
>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
similar to serine-type carboxypeptidase (SP:P55748)
[Hordeum vulgare]
Length = 479
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 422 DYIKVRRMSIFGLDVWIL*GDLSDWEVSTAGLESFLVSGVGHGV 291
D + +R +S +G W L G + W AGL V G GH V
Sbjct: 399 DALNLRPLSAYG--PWYLDGQVGGWSQQYAGLNFVTVRGAGHEV 440
>At1g15280.2 68414.m01829 glycine-rich protein
Length = 585
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 105 DGDAQILRYDNDNIGVEGFQYGYETS-NGIQHQESGQLKNIGSEN 236
D + ++YDND G + ++ E S GI + +SG +K G N
Sbjct: 53 DEEVGTVKYDNDEDGEDSYEDDEEESGGGIDNDKSGVVKEAGDMN 97
>At1g15280.1 68414.m01828 glycine-rich protein
Length = 584
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 105 DGDAQILRYDNDNIGVEGFQYGYETS-NGIQHQESGQLKNIGSEN 236
D + ++YDND G + ++ E S GI + +SG +K G N
Sbjct: 53 DEEVGTVKYDNDEDGEDSYEDDEEESGGGIDNDKSGVVKEAGDMN 97
>At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9)
identical to SUVH9 [Arabidopsis thaliana] GI:13517759;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH9 (SUVH9) GI:13517758
Length = 650
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 262 SLTSA--PME-SPTP*PTPLTRKDSSPAVLTSQSLKSP 366
SLT A P+E +P P P P + DSSP+V T + P
Sbjct: 88 SLTGAIVPVEENPEPEPNPYSTSDSSPSVATQRPRPQP 125
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 247 PSAGSSLTSAPMESP----TP*PTPLTRKDSSPAVLTSQSLKSP 366
PS S S+P+ SP TP PTP++ +SP ++ S P
Sbjct: 547 PSPSSPTPSSPIPSPPTPSTP-PTPISPGQNSPPIIPSPPFTGP 589
>At3g19170.1 68416.m02434 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 234 NEALAVSGQFSYVGPDGVTYSVTYTADEEGF 326
NEA+ + Q +YVG G YS Y D +
Sbjct: 887 NEAIVIPTQVNYVGKAGNIYSTGYELDGSAY 917
>At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 219
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 442 RSDL*YDPDFNKPIYVLVTKKKKKNSRSTVSISLI 546
+S L + DF++ + V VT KK K S S SLI
Sbjct: 119 KSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLI 153
>At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 226
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 442 RSDL*YDPDFNKPIYVLVTKKKKKNSRSTVSISLI 546
+S L + DF++ + V VT KK K S S SLI
Sbjct: 119 KSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLI 153
>At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 247
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 442 RSDL*YDPDFNKPIYVLVTKKKKKNSRSTVSISLI 546
+S L + DF++ + V VT KK K S S SLI
Sbjct: 118 KSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLI 152
>At1g17120.1 68414.m02086 amino acid permease family protein low
similarity to SP|O43246 Cationic amino acid
transporter-4 (CAT-4) {Homo sapiens}; contains Pfam
profile PF00324: Amino acid permease
Length = 590
Score = 27.5 bits (58), Expect = 7.4
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = -3
Query: 446 LRRCLITTDYIKVRRMSIFGLDVWIL*GDLSDWEVSTAGLESFLVSGVGHGVGDSIGADV 267
+RRCL D + + S+ G V+++ G + A + S+ +SGV + A+
Sbjct: 81 MRRCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCYAEF 140
Query: 266 R-ELPADGESFVL*AYV-LQLTTFLVLDTVGSLI 171
E+P G SF +Y+ ++L F+ G+++
Sbjct: 141 GVEIPVAGGSF---SYLRVELGDFIAFIAAGNIL 171
>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
protein identical to gi|4775268|emb|CAB42531
Length = 150
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 244 SPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQSLKS 363
+PSA + +P +PT PT T+ S+P + + KS
Sbjct: 23 APSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAPKS 62
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 256 GSSLTSAPMESPTP*PTPLTRKDSSPAVL--TSQSLKSP 366
G S S+P +SPT P T SPAV T+ K+P
Sbjct: 21 GQSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTP 59
>At1g72640.1 68414.m08399 expressed protein
Length = 330
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 171 YETSNGIQHQESGQLKNIGSENEALAVSGQFSY 269
YE+S GIQ + + K + ++E A+S Y
Sbjct: 218 YESSGGIQAMMNSKAKKLAEQDENAAISSNVPY 250
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 226 AQRTKLSPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQSLKSP 366
A + LSPS+ L+ +P P P P+ SP++ S SP
Sbjct: 48 APPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSP 94
>At1g49630.3 68414.m05566 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 234 NEALAVSGQFSYVGPDGVTYSVTYTADEEGF 326
NEA+ + Q +YVG G YS Y D +
Sbjct: 886 NEAIVIPTQVNYVGKAGNIYSSGYKLDGSSY 916
>At1g49630.2 68414.m05565 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 234 NEALAVSGQFSYVGPDGVTYSVTYTADEEGF 326
NEA+ + Q +YVG G YS Y D +
Sbjct: 886 NEAIVIPTQVNYVGKAGNIYSSGYKLDGSSY 916
>At1g49630.1 68414.m05564 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 234 NEALAVSGQFSYVGPDGVTYSVTYTADEEGF 326
NEA+ + Q +YVG G YS Y D +
Sbjct: 886 NEAIVIPTQVNYVGKAGNIYSSGYKLDGSSY 916
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,928,333
Number of Sequences: 28952
Number of extensions: 195986
Number of successful extensions: 681
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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