Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M17
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    29   0.53 
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    27   2.8  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    26   3.7  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.9  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    26   4.9  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.5  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   6.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.6  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   8.6  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 324 SRSSFSNYP*IHSLCRELM*LLLRP 250
           S SS  N+P  H+LC++L  LLLRP
Sbjct: 731 SGSSNINFPNSHTLCQKLCMLLLRP 755


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 168 TLEQVKQAKENAGVEQVCINLKTGDTTKGEVGV 266
           TL Q    K+ AGV     NL TG  T  E+G+
Sbjct: 403 TLAQAALVKQAAGVSVFVGNLGTGSQTWAELGI 435


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 399 ETFESNLKYAVDVLKGESLLGLIEPINQY 485
           E  +SNL  AVD+ K   +L L++ I  Y
Sbjct: 29  EEKQSNLSVAVDLTKKSEILELVDKIGPY 57


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 357 IMAGIVDKPTPKHWETFESNLKYAVDVLK 443
           ++A   DK TP HW     NLK    +LK
Sbjct: 160 VLATDEDKMTPLHWSIVGGNLKCMKLILK 188


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 103 SKIEDASANIKERFAQNFILST 38
           +KI+D++ANI  R+A+N  L T
Sbjct: 568 NKIDDSNANIGRRYARNDELGT 589


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 404 FREQSEVRCRCFKRGKSTRFD*THQSIFNAELLFE 508
           F E+ ++ C  F  GK+ + + + +S+F  +L+ E
Sbjct: 879 FLEEKQIPCEEFMPGKNAKSEKSLRSVFQEQLMRE 913


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 460 PSRLSPFKTSTAYFRLLSKVSQCFGVGLSTMPAIIW 353
           P R S   T +A FR+ ++ S+  G+ +     IIW
Sbjct: 735 PLRRSHLSTGSALFRISTQASKARGITVYLRNDIIW 770


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 360 MAGIVDKPTPKHWETFESNLKYAVDVLKGESLLGLIEPINQYSMP 494
           +A ++ K   K W++  S  KYA ++         +E I  YS P
Sbjct: 399 VANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADYLEVIYSYSYP 443


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 57  CANLSFMFAEASSILERYA-LARDAGFKAVESGFPFGCTLEQVKQAKENA 203
           C N+SF + E  S+L     +A  +G     +       L  + Q+ ENA
Sbjct: 394 CVNISFNYVEGESLLMGLKNIALSSGSACTSASLEPSYVLRAIGQSDENA 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,136
Number of Sequences: 5004
Number of extensions: 49485
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)