Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M17
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)          81   9e-16
SB_58840| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)                      30   1.7  
SB_1639| Best HMM Match : VWA (HMM E-Value=0)                          30   1.7  
SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15)                 29   3.9  
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)                  29   3.9  
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 28   5.1  
SB_33943| Best HMM Match : H-kinase_dim (HMM E-Value=4.9)              28   5.1  
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)               28   5.1  
SB_28072| Best HMM Match : VWA (HMM E-Value=0)                         28   5.1  
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           27   8.9  

>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
          Length = 260

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
 Frame = +3

Query: 48  MKFCANLSFMFAEASSILERYALARDAGFKAVESGFPFGCTLEQVKQAKENAGVEQVCIN 227
           MK  ANLS +F E   ++ER   A  AGF  VE  FP+     ++K+A E AG+    IN
Sbjct: 1   MKIAANLSLLFTELP-LIERVVAAAAAGFDGVEIQFPYELPAIRLKEALEAAGMPLRLIN 59

Query: 228 LKTGDTTKGEVGVTSVPGKENEFKDNLKTTIDYAKAVNARKIHIMAG-IVDKPTPKH-WE 401
           L  GD   G  G+ ++P ++ EF   LK  + YA  V    ++++ G + D   P+    
Sbjct: 60  LPAGDLMSGGPGLAAMPARQAEFDLALKDALSYAAMVRPALVNVLPGRLADGVEPEQALA 119

Query: 402 TFESNLKYAVDVLKGESLLGLIEPINQYSMPNYFLSDYGRAFGILDRINSPNL 560
               NL    +  +   +  ++E IN   +P + ++   +   +L  +  PNL
Sbjct: 120 CLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHPNL 172


>SB_58840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 205 PAFSLACLTCSKVQPNGKPDSTALNPASLAKAYRSKIE 92
           P F   CL C K   N KP +  LN  +  K ++  ++
Sbjct: 105 PGFQFLCLDCYKAPQNNKPKNFVLNLTTQTKDWKITLD 142


>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
          Length = 695

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 205 PAFSLACLTCSKVQPNGKPDSTALNPASLAKAYRSKIE 92
           P F   CL C K   N KP +  LN  +  K ++  ++
Sbjct: 17  PGFQFLCLDCYKAPQNNKPKNFVLNLTTQTKDWKITLD 54


>SB_1639| Best HMM Match : VWA (HMM E-Value=0)
          Length = 812

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 222 INLKTGDTTKGEVGVTSVPGKENEFKDNLKTTIDYAKAVN 341
           +N+  G +    V  +S P KE  FKDNLK   D+ K VN
Sbjct: 315 LNMSPGRSHAAMVTYSSFPVKEFGFKDNLKED-DFRKLVN 353


>SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 288 NEFKDNLKTTIDYAKAVNARKIHIMAGIVDKPTPKHWETFESNLKYAVDVLK 443
           N+ K ++   +  AK +  R I  + G  D P  + W+  E  L Y  D+++
Sbjct: 112 NQTKASVTKNLHKAKTLGIRNILALRG--DPPDGEEWKALEDGLAYGADMVR 161


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 296  QG*FENDDRLCKGRERKKNPY-NGRHSGQTHAK 391
            +G  E +D++C+ R+RK N   N RH  +T  K
Sbjct: 1226 EGTVEKEDKICRFRDRKTNDQGNHRHHSRTSEK 1258


>SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 223 IQTCSTPAFSLACLTCSKVQPNG 155
           ++ C    F+LACL+CS V P G
Sbjct: 193 LRACRVVTFTLACLSCSGVYPCG 215


>SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15)
          Length = 459

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 252 GEVGVTSVPGKENEFKDNLKTTIDYAKAVNARKIHIMAGIVDKPTPKHWETFESNL 419
           G++   SVP  E  F+D+L+T + + +A N + + +     DK  P  W   E+ L
Sbjct: 140 GDLCAASVPVTEWLFRDDLQTKLTHIRAAN-KILPVFLHSTDKQQPT-WHESEAEL 193


>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
          Length = 662

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -3

Query: 358 IWIFLAFTAFA*SIVVFKLSLNSFSLPGTDXXXXXXXXXXXVFKLIQTCSTPAFSLACLT 179
           +WI +A + F   +    L  N+FSL G D            F L+  CS+   +L C T
Sbjct: 307 VWIVVAISFFI-GLTAGALYCNAFSLSGKDNVSAVRREFSRAFLLLICCSSRVITL-CRT 364


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 460  PSRLSPFKTSTAYFRLLSKVSQCFGVGLSTMPAIIW 353
            P  L+P   STA  R  S V  C+  G   MP I W
Sbjct: 1163 PQILTPLTRSTAVLRGKSAVLTCYATG-DPMPRIAW 1197


>SB_33943| Best HMM Match : H-kinase_dim (HMM E-Value=4.9)
          Length = 171

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 129 GFKAVESGFPFGCTLEQVKQAKENAGVEQVCINLKTGDTTKGEVGVTSVPGK 284
           G KAV      G  L  + Q  + A VEQVC +L   D   GE+ +    GK
Sbjct: 58  GEKAVRECIQQGRVLGSMSQDSDRARVEQVCDDL---DQLMGELALLRAQGK 106


>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
          Length = 905

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 317 DRLCKGRERKKNPYNGRHSGQTHAKALGNFREQSEVRCRCFK 442
           DR+ +GR+R  N   GR  G       G F  +++ RCR ++
Sbjct: 219 DRIGRGRDRDNNR-TGRSRGHRDRYQEGRFSREAKNRCRDYE 259


>SB_28072| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2979

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 222  INLKTGDTTKGEVGVTSVPGKENEFKDNLKTTIDYAKAVN 341
            +N+  G +    V  +S P KE  F+DNLK   D+ K VN
Sbjct: 2046 LNMSPGRSHAAMVTYSSFPVKEFGFQDNLKED-DFRKLVN 2084


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
 Frame = +3

Query: 99  LERYALARDAGFKAVESGFPFGCTLEQVKQAKENAGVE--QVCINLKTGDTTKGEVGVTS 272
           +E Y LA  AGF+A  + FPF CT +Q  Q ++   ++     I  K     KG+     
Sbjct: 638 VEPYLLA--AGFEAFYTEFPFLCTDKQFYQLEDYKRIQIYPSIILPKQLYLGKGDQATNK 695

Query: 273 VPGKENEFKDNLKTTIDYAKAVNARKIHIMAGIVDKPTPKHWETFESNLKYAVDVLKG 446
              ++ +    +  T ++  A      ++   + D P  +    FE   K+  D + G
Sbjct: 696 KIMEDLKITHIVNITQEHKSAFPESIEYLTLQLDDVPQTQLINFFEKTTKFLSDAIDG 753


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 444 LLKHRQRTSDCSRKFPSALAW--VCPLCR 364
           LL HR R SD  R    +L+W  V PLC+
Sbjct: 539 LLCHRDRMSDQKRGLGPSLSWNQVLPLCK 567


>SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 205 PAFSLACLTCSKVQPNGKPDSTALNPASLAKAYRSKIE 92
           P F   CL C K     KP +  LN ++  K ++  ++
Sbjct: 154 PGFQFLCLNCHKDPKKNKPKNFVLNLSTQTKDWKITLD 191


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +3

Query: 51  KFCANLSFMFAEASSILERYALARDAGFKAVES-----GFPFGCTLEQVKQAKENAGVEQ 215
           +FC+N+        S++   AL   +G K VES     GFP     +Q K  ++ + V+Q
Sbjct: 702 RFCSNI---LVHIKSVVVPTAL--QSGAKQVESYLASTGFPQDVNSDQAKLTQKGSSVQQ 756

Query: 216 VCINLKTGDTTK 251
            C  ++  DT +
Sbjct: 757 KCNAVQNIDTAQ 768


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -3

Query: 211 STPAFSLACLTCSKVQPNGKPDSTALNPASLAKAYRSKIEDASANIKERFAQNF 50
           +TP  S+    C+K +   KP ST  + ++    Y +    ++ + K  F   +
Sbjct: 215 ATPCSSVNNTKCTKSRNTSKPSSTTSSKSTFESGYNNSKPSSTTSSKSTFESGY 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,536,903
Number of Sequences: 59808
Number of extensions: 356745
Number of successful extensions: 998
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)