Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M17
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32470.1 68418.m03828 expressed protein                             29   1.8  
At4g30130.1 68417.m04283 expressed protein contains Pfam domains...    28   5.5  
At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein con...    27   7.3  
At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    27   9.6  
At3g58060.1 68416.m06472 cation efflux family protein / metal to...    27   9.6  
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    27   9.6  

>At5g32470.1 68418.m03828 expressed protein
          Length = 575

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 120 RDAGFKAVESGFPFGCTLEQVKQAKENAGVEQVCINL 230
           ++A  + +ESG   G  LE +K+A E   ++  CIN+
Sbjct: 407 KEANNRVIESGVLKGLNLEDIKRAGERLILQDGCINV 443


>At4g30130.1 68417.m04283 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 725

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 162 GCTLEQVKQAKENAGVEQVCINLKTGDTTKGEVGVTSVPGK 284
           GC +E       N   E+  + +  G TT   VGVTS  GK
Sbjct: 248 GCKIENESDKNCNGTQERRSLEVSRGGTTGHVVGVTSDDGK 288


>At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966) [Prunus serotina]
          Length = 534

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 432 DVLKGESLLGLIEPINQYSMPNYFLSDYGRA 524
           DV +G SL     P+N+YS P +F  D+G A
Sbjct: 18  DVAQGRSLRFSTTPLNRYSFPPHF--DFGVA 46


>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 162 GCTLEQVKQAKENAGVEQVCINLKTG 239
           GC  +QVK AKE   V+ +C  L  G
Sbjct: 191 GCWRKQVKVAKETRRVDVLCYRLSLG 216


>At3g58060.1 68416.m06472 cation efflux family protein / metal
           tolerance protein, putative (MTPc3) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 411

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 434 IDSVLQIALESFPVLWRGFVHYAGHYMDFSCVH 336
           I   LQI LE  P + R FVH     +DF C H
Sbjct: 370 IGESLQIKLEELPEVERAFVH-----LDFECHH 397


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 372 VDKPTPKHWETFESNLKYAVDVLKGES 452
           +D P   HWET   NLK    +L  ++
Sbjct: 649 IDHPLSDHWETLRVNLKNTTTLLLSDA 675


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,591
Number of Sequences: 28952
Number of extensions: 252925
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)