Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M16
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)            97   1e-20
SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)             51   5e-07
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              39   0.002
SB_145| Best HMM Match : OATP (HMM E-Value=4.2)                        35   0.037
SB_12155| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_39744| Best HMM Match : Sybindin (HMM E-Value=3.6)                  29   2.5  
SB_13044| Best HMM Match : Vps26 (HMM E-Value=0)                       29   3.2  
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       27   9.9  
SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)                  27   9.9  

>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
          Length = 330

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
 Frame = +1

Query: 223 QEVPRAKIALQHNLGLGGAVVITMYRKGF--TNVTPNNV--SAIASTPDDFKVYKYMKIL 390
           ++VP AK+ALQHNLGLGGAV++ +YR GF  +   P     +A A+  D FK       +
Sbjct: 121 RQVPGAKLALQHNLGLGGAVIVALYRMGFPKSRFQPRQAYTAATATGKDGFKSAAVFDEI 180

Query: 391 EEAMETDQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGKVAY 531
           E+ ++ D    ++KV+G+Y FK++ GP G EG WV++ K G G V +
Sbjct: 181 EKQIKKDGAKFVKKVKGVYCFKIQGGPGGKEGVWVVDVKSGNGSVKF 227


>SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)
          Length = 331

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
 Frame = +1

Query: 223 QEVPRAKIALQHNLGLGGAVVITMYRKGF--TNVTPNN--VSAIASTPDDFK 366
           ++VP AK+ALQHNLGLGGAV++ +YR GF  +   P     +A A+  D FK
Sbjct: 266 RQVPGAKLALQHNLGLGGAVIVALYRMGFPKSRFQPRQAYTAATATGKDGFK 317


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +1

Query: 238 AKIALQHNLGLGGAVVITMYRKGFTNVTPN--NVSAIASTPDDFKVYKYMKILE-EAMET 408
           +++  Q  +   G VVI+     FT +TPN  NV+ + S P    +       E +   +
Sbjct: 558 SRVHFQSKVVENGTVVISGAYVDFTELTPNIPNVTDVLSQPSSSGLKSEALFAELKKRVS 617

Query: 409 DQDNLIEKVRGIYGFKVKNGPNGAEGYWVINAKEGKGKV 525
           D  +L++KV+GI+ + VK G       W ++ K   G V
Sbjct: 618 DHPDLVKKVKGIFLWHVKKGGKVVSS-WTVDLKTPGGAV 655


>SB_145| Best HMM Match : OATP (HMM E-Value=4.2)
          Length = 264

 Score = 35.1 bits (77), Expect = 0.037
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +1

Query: 178 QLTATSLFQFVGRLCQEVPRAKIALQHNLGLGGAVVITMYRKGFTNVTPNNVSAIASTPD 357
           Q++A  LF   G L   + R   + ++ +   GA ++++    F+N  P+ + ++ S PD
Sbjct: 71  QVSAPDLFNTTGHLSPGIYREHCSKKYLMFYAGACIVSIVL-AFSNQIPSKLVSLRSVPD 129

Query: 358 DFKVY 372
           D + Y
Sbjct: 130 DLRAY 134


>SB_12155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 223 QEVPRAKIALQHNLGLGGAVVI 288
           ++V  A++A+QHN G+GGA V+
Sbjct: 236 RQVEGARVAMQHNYGIGGAAVL 257


>SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 413 WSVSMASSKIFMYL*TLKSSGVLAIADTLFGVTFVNPLRYIVMTTAPPKPR 261
           WS + +S ++ +   T  S+  L    TL G+TF N    I  TT P K +
Sbjct: 320 WSRAWSSGELILQKMTQSSANSLISEATLAGMTFTNNRNNIWPTTVPCKTK 370


>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1690

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 247 ALQHNLGLGGAVVITMYRKGFTNVTPNNVSAIASTP-DDFKVYKYMKILEEAMETDQDNL 423
           A QHN+ +   +V T  R G   +    V  +A+      K+    + +   ++   DN+
Sbjct: 704 AKQHNINMKLELVYTSERSGLEYMVVGLVKTVATVRVGKSKLTDIFESIRPPIKLTFDNI 763

Query: 424 IEKVRGIYGFKVKNG 468
           ++ +  +Y  K K+G
Sbjct: 764 LQYINKVYVIKTKSG 778


>SB_39744| Best HMM Match : Sybindin (HMM E-Value=3.6)
          Length = 211

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 413 WSVSMASSKIFMYL*TLKSSGVLAIADTLFGVTFVNPLRYIVMTTAPPKPR 261
           WS + +S ++ +   T  S+  L    TL G+TF N    I  TT P K +
Sbjct: 141 WSRAWSSGELILQKMTQSSANSLIPEATLAGMTFTNNRNNIWPTTVPCKTK 191


>SB_13044| Best HMM Match : Vps26 (HMM E-Value=0)
          Length = 669

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +1

Query: 325 NNVSAIASTPDDFKVYKYMKILEEAMETDQDNLIEKVRGI-YGFKVKNGPNG----AEGY 489
           +N   + S   D +V+K  +I+ E  ET+    +  +RG  +G+ + NG  G       Y
Sbjct: 485 HNELLVGSEDFDIRVFKEDEIIAEMTETEAVTSLCPLRGSKFGYALSNGTVGVYDRTARY 544

Query: 490 WVINAK 507
           W I +K
Sbjct: 545 WRIKSK 550


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = +1

Query: 307 FTNVTPNNVSAIASTPDDFKVYKYMKILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAEG 486
           FT+++ NN+++I  + +DF  ++ +K L +A   +   LI    G +GF+  +     +G
Sbjct: 635 FTDISHNNLNSIYHSAEDF--FRLLKNLHQANHLNNTILI--TFGDHGFRYGSSRTTLQG 690

Query: 487 Y 489
           +
Sbjct: 691 H 691


>SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)
          Length = 1115

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +1

Query: 319 TPNNVSAIASTPDDFKVYKYMKILEEAMETDQDNLIEKVRGIYGFKVKNGPNG 477
           TP     ++ TP+  + Y++ + ++E      D+ + ++    G+K+ + P G
Sbjct: 241 TPTPGQLVSMTPEQMQAYRWEREIDERNRVLSDDELNQLFPKEGYKILDPPPG 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,507
Number of Sequences: 59808
Number of extensions: 270740
Number of successful extensions: 586
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)