Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M16
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina...    28   3.5  
At4g00315.1 68417.m00040 F-box family protein contains F-box dom...    28   4.6  

>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
            family protein low similarity to phosphatidylinositol
            3,5-kinase [Candida albicans] GI:14571648; contains Pfam
            profile PF01504: Phosphatidylinositol-4-phosphate
            5-Kinase
          Length = 1648

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 373  KYMKILEEAMETDQDNLIEKVRGIYGFKVKNGPNGAE 483
            +Y K L+E++ +     + K+ GIY   +K+   G E
Sbjct: 1450 EYFKYLKESLSSGSPTCLAKILGIYQVSIKHPKGGKE 1486


>At4g00315.1 68417.m00040 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 441

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 259 NLGLGGAVVITMYRKGFTNVTPNNVSAIA-STPDDFKVYKYMKILEEAMETDQDNLIEKV 435
           NLG    VV ++ R       P ++  I  +TP      KY+K+ +E  E+D DN  +  
Sbjct: 195 NLGKLSVVVKSLQRLTLKMSCPCHLDGIMMNTPS----LKYLKVTDERQESDSDNESDSD 250

Query: 436 RGIYGFKVKNGPNGAEGYWVI 498
              Y +  ++ P   E  +V+
Sbjct: 251 SPRYFYDFEDMPKLEEADFVL 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,726,847
Number of Sequences: 28952
Number of extensions: 196621
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)