Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M15
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   3.8  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   8.9  

>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 466 NDRSYWLSTGQPIPMMPVEGNEIVKYISRCV 558
           ND + +L+TGQP+  + +   E +++++  V
Sbjct: 215 NDHTRFLATGQPVAYIKLTPEEYIRFLTNPV 245


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 95  TEGSLVRKDNQDLRVHKASKEYRVNEEKSVLLEEMAHLAHQVHHAPLQIT*LVY 256
           T+ + +  D+  + V   S   R+N  K  +L + A L H V     + T LVY
Sbjct: 244 TDLNNILDDDNSILVPDLSAHVRINSGKLSVLSKNARLTHWVERRIGKSTSLVY 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,427
Number of Sequences: 5004
Number of extensions: 51334
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)