Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M15
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 4e-47
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 7e-40
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 109 1e-24
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 67 1e-11
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 31 0.57
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 28 5.4
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15) 28 5.4
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 7.1
SB_165| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 184 bits (449), Expect = 4e-47
Identities = 77/125 (61%), Positives = 96/125 (76%)
Frame = +1
Query: 250 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 429
G L RHSQ VP+C LW+GYSLLY+ GNE+AH QDLG GSC+++FSTMPFLF
Sbjct: 1574 GFFLTRHSQTVRVPRCPEDRPPLWEGYSLLYVQGNERAHGQDLGSPGSCIQRFSTMPFLF 1633
Query: 430 CDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLD 609
C++N+VCN ASRND S+WLST +PIPMMPV+ + YI RC VCEV S+V+AVHSQ++
Sbjct: 1634 CNINNVCNLASRNDYSFWLSTPEPIPMMPVQETNVQPYIGRCAVCEVSSHVMAVHSQSIT 1693
Query: 610 IPGCP 624
+P CP
Sbjct: 1694 VPSCP 1698
Score = 61.7 bits (143), Expect = 5e-10
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 402
CA + + ++ V HSQ VP C G LW GYS L++ Q L GSC+
Sbjct: 1718 CAVCEVSSHVMAV-HSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLE 1776
Query: 403 KFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ-------PIPMMPVEGNEIVKYISRCVV 561
F PF+ C C+Y + S+WL+T P P GN + + +SRC V
Sbjct: 1777 DFRAHPFIECHGRGTCHYYG-STYSFWLATVDQNKQFRIPRPETLKAGN-LRERVSRCQV 1834
Query: 562 CE 567
C+
Sbjct: 1835 CQ 1836
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +1
Query: 532 IVKYISRCVVCEVPSNVIAVHSQTLDIPGCP 624
++ YI RC VCEV S+V+AVHSQ++ +P CP
Sbjct: 1711 LMPYIGRCAVCEVSSHVMAVHSQSITVPSCP 1741
Score = 34.3 bits (75), Expect = 0.082
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSLL 339
CA + + ++ V HSQ VP C G LW GYS L
Sbjct: 1675 CAVCEVSSHVMAV-HSQSITVPSCPSGWSPLWQGYSFL 1711
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 160 bits (389), Expect = 7e-40
Identities = 65/117 (55%), Positives = 88/117 (75%)
Frame = +1
Query: 250 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 429
G +V+HSQ P+C P + KLWDGYSLLY+ G++ +H QDLG AGSC+++F+TMP+L+
Sbjct: 1460 GFYIVKHSQTTTPPECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLY 1519
Query: 430 CDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQ 600
C++ CNYASRND SYWLST +PMMP++ + + YISRC VCE V+AVHS+
Sbjct: 1520 CNIFGKCNYASRNDYSYWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSK 1576
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 370 QDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST-GQPIPMMPVE---GNEIV 537
Q LG +GSC+ F PF C C+Y + N S+WL+T P E ++
Sbjct: 1592 QSLGSSGSCLESFRPNPFTECHGRGTCHYYA-NKYSFWLATVNTPFQTQQSETLKAGNLL 1650
Query: 538 KYISRCVVC 564
+SRC VC
Sbjct: 1651 SRVSRCQVC 1659
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 109 bits (263), Expect = 1e-24
Identities = 43/77 (55%), Positives = 60/77 (77%)
Frame = +1
Query: 250 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 429
G +V+HSQ P+C P + KLWDGYSLLY+ G++ +H QDLG AGSC+++F+TMP+L+
Sbjct: 64 GFYIVKHSQTTTPPECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLY 123
Query: 430 CDLNDVCNYASRNDRSY 480
C++ CNYASRND S+
Sbjct: 124 CNIFGKCNYASRNDYSH 140
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Frame = +1
Query: 250 GILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFL 426
G ++ HSQ +P C G LW GYS L++ Q LG +GSC+ F PF+
Sbjct: 34 GPVMAVHSQSTTLPTCPGGWSSLWSGYSFLMHTGAGGSGTGQSLGSSGSCLESFRPNPFI 93
Query: 427 FCDLNDVCNYASRNDRSYWLST-GQPIPMMPVE---GNEIVKYISRCVVC 564
C C+Y + N S+WL+T P E ++ +SRC VC
Sbjct: 94 ECHGRGTCHYYA-NKYSFWLATVNTPFQTQQSETLKAGNLLSRVSRCQVC 142
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +1
Query: 478 YWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCP 624
YWLST +PMMP++ + + YISRC VCE V+AVHSQ+ +P CP
Sbjct: 2 YWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSQSTTLPTCP 50
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSDXXXXXXXXXXXXXMKGDR 99
GPRG G+ G PG+D +KGDR
Sbjct: 232 GPRGANGVPGSPGADGDTGEAGEHGADGLKGDR 264
>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Frame = -2
Query: 225 WCTW--WARWAISSSNTDFSSFTLYSLEALW-TRRSWLSLRTREPSVSFHSWGTIQSWST 55
W T+ W+ + S++ ++S++ +S W T +W T ++++W T +W+T
Sbjct: 48 WSTYNNWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNW---STHNNWSTYNNWSTHNNWNT 104
Query: 54 R---GTI*XWKTI--YSRNTAWS 1
R T W T +S + WS
Sbjct: 105 RNNWSTHNNWSTYNNWSTHNNWS 127
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = -2
Query: 213 WARWAISSSNTDFSSFTLYSLEALW-TRRSWLSLR---TREPSVSFHSWGTIQSWSTRGT 46
W+ + S+ ++SS +S+ W T +W + T ++++W T +WST
Sbjct: 6 WSAYHNWSTYENWSSHNNWSIHNNWSTHNNWSTYNNWSTHNNWSTYNNWSTYNNWSTHNN 65
Query: 45 I*XWKTI--YSRNTAWS 1
W T +S + WS
Sbjct: 66 ---WSTYNNWSTHNNWS 79
>SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 300
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 340 IIANNRPIILHVLVHIEVQLPFGCVALI 257
I+ NNR + LH+++ V +PF C++L+
Sbjct: 136 IVTNNRVVKLHIIIW-TVTVPFTCLSLL 162
>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
Length = 930
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 181 RFLLVHPVFLGSLVDPEVLVVLADQGTLGLLSFLGHHSILEHQG 50
R LLVH LG++V V+L +G LG + +LEH+G
Sbjct: 213 RVLLVHRGGLGTVVRGNPRVLLEHRGGLGTVVTGNPRVLLEHRG 256
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 1 GPRGVPGIDGLPG 39
GP+G+PG DGLPG
Sbjct: 125 GPQGLPGRDGLPG 137
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 340 YIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ 498
Y D + K + + G +G S PFL C L+ C A R S L T +
Sbjct: 364 YWDNSFKCFSTESGQSGCTRIATSPQPFLSCSLSFACLLAHRASVSLDLDTSK 416
>SB_165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -2
Query: 213 WARWAISSSNTDFSSF-TLYSLEALWTRRSWLSLRTREPSVSFHSWGTIQSWSTRGTI*X 37
W+ +S+ D + TLY + + + W +L S W T+ ++ +
Sbjct: 190 WSTLYYMTSSYDVGGWSTLYYMTSSYEVSGWSTLYYMTSSYEVSGWSTLYYMTSSYEVSG 249
Query: 36 WKTIYSRNTAW 4
W T+Y +++
Sbjct: 250 WSTLYYMTSSY 260
>SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 440 LRSQKRNGIVLNFRTHEPAYPRSWLCAFSFPSIY 339
+R R I++ R+ A SW+ +F FPSIY
Sbjct: 127 VRPPHRGQILVTKRSVALAISSSWIFSFMFPSIY 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,613
Number of Sequences: 59808
Number of extensions: 389591
Number of successful extensions: 1162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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