Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M15
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 215 3e-56
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 215 3e-56
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 213 9e-56
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 213 9e-56
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 213 9e-56
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 213 9e-56
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 172 2e-43
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 172 2e-43
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 172 2e-43
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 172 2e-43
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF024503-17|AAG24085.1| 354|Caenorhabditis elegans Hypothetical... 29 2.7
Z27079-4|CAA81591.1| 78|Caenorhabditis elegans Hypothetical pr... 29 3.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 4.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 4.7
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 28 4.7
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 4.7
AC024751-11|ABF71718.1| 302|Caenorhabditis elegans Collagen pro... 28 4.7
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 28 6.2
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 28 6.2
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 6.2
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 28 6.2
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 28 6.2
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 28 6.2
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 28 6.2
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 28 6.2
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 28 6.2
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 6.2
Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical pr... 27 8.2
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 8.2
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 8.2
AF106577-5|AAC78192.2| 353|Caenorhabditis elegans Hypothetical ... 27 8.2
AF068721-4|AAC19260.1| 298|Caenorhabditis elegans Hypothetical ... 27 8.2
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 27 8.2
AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered cu... 27 8.2
AC087081-13|AAK66033.1| 253|Caenorhabditis elegans Hypothetical... 27 8.2
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 215 bits (524), Expect = 3e-56
Identities = 91/128 (71%), Positives = 105/128 (82%)
Frame = +1
Query: 241 YLTGILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMP 420
Y G +LV+HSQ VP+C G KLWDGYSLLYI+GNEK+HNQDLG+AGSC+++FSTMP
Sbjct: 1528 YRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMP 1587
Query: 421 FLFCDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQ 600
FLFCD N+VCNYASRND+SYWLST + IPMMPV EI YISRC VCE P+N IAVHSQ
Sbjct: 1588 FLFCDFNNVCNYASRNDKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQ 1647
Query: 601 TLDIPGCP 624
T+ IP CP
Sbjct: 1648 TIQIPNCP 1655
Score = 54.8 bits (126), Expect = 5e-08
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVR 402
CA + + V HSQ +P C G LW GYS ++ + Q L GSC+
Sbjct: 1632 CAVCEAPANTIAV-HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLE 1690
Query: 403 KFSTMPFLFCD-LNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVK------YISRCVV 561
F PF+ C+ C+Y + N S+WL+T V ++ +K +SRC V
Sbjct: 1691 DFRATPFIECNGARGSCHYFA-NKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQV 1749
Query: 562 C 564
C
Sbjct: 1750 C 1750
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
G +G+PG+DG PG+D
Sbjct: 1456 GEKGMPGLDGPPGND 1470
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 215 bits (524), Expect = 3e-56
Identities = 91/128 (71%), Positives = 105/128 (82%)
Frame = +1
Query: 241 YLTGILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMP 420
Y G +LV+HSQ VP+C G KLWDGYSLLYI+GNEK+HNQDLG+AGSC+++FSTMP
Sbjct: 1529 YRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMP 1588
Query: 421 FLFCDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQ 600
FLFCD N+VCNYASRND+SYWLST + IPMMPV EI YISRC VCE P+N IAVHSQ
Sbjct: 1589 FLFCDFNNVCNYASRNDKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQ 1648
Query: 601 TLDIPGCP 624
T+ IP CP
Sbjct: 1649 TIQIPNCP 1656
Score = 54.8 bits (126), Expect = 5e-08
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVR 402
CA + + V HSQ +P C G LW GYS ++ + Q L GSC+
Sbjct: 1633 CAVCEAPANTIAV-HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLE 1691
Query: 403 KFSTMPFLFCD-LNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVK------YISRCVV 561
F PF+ C+ C+Y + N S+WL+T V ++ +K +SRC V
Sbjct: 1692 DFRATPFIECNGARGSCHYFA-NKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQV 1750
Query: 562 C 564
C
Sbjct: 1751 C 1751
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
G +G+PG+DG PG+D
Sbjct: 1457 GEKGMPGLDGPPGND 1471
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 213 bits (520), Expect = 9e-56
Identities = 90/128 (70%), Positives = 105/128 (82%)
Frame = +1
Query: 241 YLTGILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMP 420
Y G +LV+HSQ VP+C G KLWDGYSLLYI+GNEK+HNQDLG+AGSC+++FSTMP
Sbjct: 1529 YRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMP 1588
Query: 421 FLFCDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQ 600
FLFCD N+VCNYASRN++SYWLST + IPMMPV EI YISRC VCE P+N IAVHSQ
Sbjct: 1589 FLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQ 1648
Query: 601 TLDIPGCP 624
T+ IP CP
Sbjct: 1649 TIQIPNCP 1656
Score = 52.0 bits (119), Expect = 3e-07
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVR 402
CA + + V HSQ +P C G LW GYS ++ + Q GSC+
Sbjct: 1633 CAVCEAPANTIAV-HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLE 1691
Query: 403 KFSTMPFLFCD-LNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVK------YISRCVV 561
F PF+ C+ C+Y + N S+WL+T V ++ +K +SRC V
Sbjct: 1692 DFRATPFIECNGARGSCHYFA-NKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQV 1750
Query: 562 C 564
C
Sbjct: 1751 C 1751
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
G +G+PG+DG PG+D
Sbjct: 1457 GEKGMPGLDGPPGND 1471
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 213 bits (520), Expect = 9e-56
Identities = 90/128 (70%), Positives = 105/128 (82%)
Frame = +1
Query: 241 YLTGILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMP 420
Y G +LV+HSQ VP+C G KLWDGYSLLYI+GNEK+HNQDLG+AGSC+++FSTMP
Sbjct: 1528 YRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMP 1587
Query: 421 FLFCDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQ 600
FLFCD N+VCNYASRN++SYWLST + IPMMPV EI YISRC VCE P+N IAVHSQ
Sbjct: 1588 FLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQ 1647
Query: 601 TLDIPGCP 624
T+ IP CP
Sbjct: 1648 TIQIPNCP 1655
Score = 52.0 bits (119), Expect = 3e-07
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVR 402
CA + + V HSQ +P C G LW GYS ++ + Q GSC+
Sbjct: 1632 CAVCEAPANTIAV-HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLE 1690
Query: 403 KFSTMPFLFCD-LNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVK------YISRCVV 561
F PF+ C+ C+Y + N S+WL+T V ++ +K +SRC V
Sbjct: 1691 DFRATPFIECNGARGSCHYFA-NKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQV 1749
Query: 562 C 564
C
Sbjct: 1750 C 1750
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
G +G+PG+DG PG+D
Sbjct: 1456 GEKGMPGLDGPPGND 1470
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 213 bits (520), Expect = 9e-56
Identities = 90/128 (70%), Positives = 105/128 (82%)
Frame = +1
Query: 241 YLTGILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMP 420
Y G +LV+HSQ VP+C G KLWDGYSLLYI+GNEK+HNQDLG+AGSC+++FSTMP
Sbjct: 1565 YRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMP 1624
Query: 421 FLFCDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQ 600
FLFCD N+VCNYASRN++SYWLST + IPMMPV EI YISRC VCE P+N IAVHSQ
Sbjct: 1625 FLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQ 1684
Query: 601 TLDIPGCP 624
T+ IP CP
Sbjct: 1685 TIQIPNCP 1692
Score = 52.0 bits (119), Expect = 3e-07
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVR 402
CA + + V HSQ +P C G LW GYS ++ + Q GSC+
Sbjct: 1669 CAVCEAPANTIAV-HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLE 1727
Query: 403 KFSTMPFLFCD-LNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVK------YISRCVV 561
F PF+ C+ C+Y + N S+WL+T V ++ +K +SRC V
Sbjct: 1728 DFRATPFIECNGARGSCHYFA-NKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQV 1786
Query: 562 C 564
C
Sbjct: 1787 C 1787
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
G +G+PG+DG PG+D
Sbjct: 1493 GEKGMPGLDGPPGND 1507
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 213 bits (520), Expect = 9e-56
Identities = 90/128 (70%), Positives = 105/128 (82%)
Frame = +1
Query: 241 YLTGILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMP 420
Y G +LV+HSQ VP+C G KLWDGYSLLYI+GNEK+HNQDLG+AGSC+++FSTMP
Sbjct: 31 YRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMP 90
Query: 421 FLFCDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQ 600
FLFCD N+VCNYASRN++SYWLST + IPMMPV EI YISRC VCE P+N IAVHSQ
Sbjct: 91 FLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQ 150
Query: 601 TLDIPGCP 624
T+ IP CP
Sbjct: 151 TIQIPNCP 158
Score = 54.8 bits (126), Expect = 5e-08
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVR 402
CA + + V HSQ +P C G LW GYS ++ + Q L GSC+
Sbjct: 135 CAVCEAPANTIAV-HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLE 193
Query: 403 KFSTMPFLFCD-LNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVK------YISRCVV 561
F PF+ C+ C+Y + N S+WL+T V ++ +K +SRC V
Sbjct: 194 DFRATPFIECNGARGSCHYFA-NKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQV 252
Query: 562 C 564
C
Sbjct: 253 C 253
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 172 bits (418), Expect = 2e-43
Identities = 75/127 (59%), Positives = 93/127 (73%), Gaps = 2/127 (1%)
Frame = +1
Query: 250 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 429
G +HSQ VPQC PG +LW+GYSLLY+ GN +A QDLG GSC+ KF+TMPF+F
Sbjct: 1278 GFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMF 1337
Query: 430 CDLNDVCNYASRNDRSYWLSTGQPI-PMM-PVEGNEIVKYISRCVVCEVPSNVIAVHSQT 603
C++N VC+ +SRND S+WLST +P+ PMM PV G I YISRC VCEVP+ +IAVHSQ
Sbjct: 1338 CNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQD 1397
Query: 604 LDIPGCP 624
+P CP
Sbjct: 1398 TSVPQCP 1404
Score = 64.1 bits (149), Expect = 8e-11
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 402
CA + T I+ V HSQ VPQC G +W GYS +++ + Q L GSC+
Sbjct: 1381 CAVCEVPTQIIAV-HSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLE 1439
Query: 403 KFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQP-----IPM-MPVEGNEIVKYISRCVVC 564
+F +PF+ C CNY + N +WLS PM ++ + +SRC VC
Sbjct: 1440 EFRAVPFIECHGRGTCNYYATN-HGFWLSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVC 1498
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 172 bits (418), Expect = 2e-43
Identities = 75/127 (59%), Positives = 93/127 (73%), Gaps = 2/127 (1%)
Frame = +1
Query: 250 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 429
G +HSQ VPQC PG +LW+GYSLLY+ GN +A QDLG GSC+ KF+TMPF+F
Sbjct: 1535 GFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMF 1594
Query: 430 CDLNDVCNYASRNDRSYWLSTGQPI-PMM-PVEGNEIVKYISRCVVCEVPSNVIAVHSQT 603
C++N VC+ +SRND S+WLST +P+ PMM PV G I YISRC VCEVP+ +IAVHSQ
Sbjct: 1595 CNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQD 1654
Query: 604 LDIPGCP 624
+P CP
Sbjct: 1655 TSVPQCP 1661
Score = 64.1 bits (149), Expect = 8e-11
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 402
CA + T I+ V HSQ VPQC G +W GYS +++ + Q L GSC+
Sbjct: 1638 CAVCEVPTQIIAV-HSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLE 1696
Query: 403 KFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQP-----IPM-MPVEGNEIVKYISRCVVC 564
+F +PF+ C CNY + N +WLS PM ++ + +SRC VC
Sbjct: 1697 EFRAVPFIECHGRGTCNYYATN-HGFWLSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVC 1755
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 172 bits (418), Expect = 2e-43
Identities = 75/127 (59%), Positives = 93/127 (73%), Gaps = 2/127 (1%)
Frame = +1
Query: 250 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 429
G +HSQ VPQC PG +LW+GYSLLY+ GN +A QDLG GSC+ KF+TMPF+F
Sbjct: 1534 GFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMF 1593
Query: 430 CDLNDVCNYASRNDRSYWLSTGQPI-PMM-PVEGNEIVKYISRCVVCEVPSNVIAVHSQT 603
C++N VC+ +SRND S+WLST +P+ PMM PV G I YISRC VCEVP+ +IAVHSQ
Sbjct: 1594 CNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQD 1653
Query: 604 LDIPGCP 624
+P CP
Sbjct: 1654 TSVPQCP 1660
Score = 61.3 bits (142), Expect = 5e-10
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 402
CA + T I+ V HSQ VPQC G +W GYS +++ + Q L GSC+
Sbjct: 1637 CAVCEVPTQIIAV-HSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLE 1695
Query: 403 KFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQP-----IPM-MPVEGNEIVKYISRCVVC 564
+F +PF+ C CNY + N +W S PM ++ + +SRC VC
Sbjct: 1696 EFRAVPFIECHGRGTCNYYATN-HGFWPSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVC 1754
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 172 bits (418), Expect = 2e-43
Identities = 75/127 (59%), Positives = 93/127 (73%), Gaps = 2/127 (1%)
Frame = +1
Query: 250 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 429
G +HSQ VPQC PG +LW+GYSLLY+ GN +A QDLG GSC+ KF+TMPF+F
Sbjct: 89 GFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMF 148
Query: 430 CDLNDVCNYASRNDRSYWLSTGQPI-PMM-PVEGNEIVKYISRCVVCEVPSNVIAVHSQT 603
C++N VC+ +SRND S+WLST +P+ PMM PV G I YISRC VCEVP+ +IAVHSQ
Sbjct: 149 CNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQD 208
Query: 604 LDIPGCP 624
+P CP
Sbjct: 209 TSVPQCP 215
Score = 61.3 bits (142), Expect = 5e-10
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +1
Query: 226 CATTDYLTGILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 402
CA + T I+ V HSQ VPQC G +W GYS +++ + Q L GSC+
Sbjct: 192 CAVCEVPTQIIAV-HSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLE 250
Query: 403 KFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQP-----IPM-MPVEGNEIVKYISRCVVC 564
+F +PF+ C CNY + N +W S PM ++ + +SRC VC
Sbjct: 251 EFRAVPFIECHGRGTCNYYATN-HGFWPSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVC 309
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 31.1 bits (67), Expect = 0.67
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP GVPG+DG PG D
Sbjct: 141 GPNGVPGVDGKPGHD 155
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP GVPG+DG PG D
Sbjct: 158 GPNGVPGLDGKPGLD 172
>Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical
protein F28C6.3 protein.
Length = 430
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 277 REVVPQCEPGHVKLWDGYSLLYIDGNEKAHN 369
R V + GHVK+WDG S ++ ++AH+
Sbjct: 272 RLYVTASKDGHVKIWDGVSNRCVETFKRAHD 302
>AF024503-17|AAG24085.1| 354|Caenorhabditis elegans Hypothetical
protein F31F4.1 protein.
Length = 354
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = -2
Query: 180 DFSSFTLYSLEALWTRRSWLSLRTREPSVSF--HSWGTIQSWSTRG 49
DF + W R WL+ P + F H W +SW RG
Sbjct: 237 DFGKIRILEKGTSWVRDGWLTKSQWHPGIDFMLHGW---KSWQLRG 279
>Z27079-4|CAA81591.1| 78|Caenorhabditis elegans Hypothetical
protein T05G5.4 protein.
Length = 78
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 101 GSLVRKDNQDLRVHKASKEYRVNEEKSVL 187
G+L+RK N R+H+ E V E+K +L
Sbjct: 47 GTLIRKQNYRARIHERMVEQPVTEKKELL 75
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP+G PG DG PG+D
Sbjct: 243 GPKGAPGPDGPPGAD 257
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP+G PG DG PG+D
Sbjct: 243 GPKGAPGPDGPPGAD 257
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PG DG PGSD
Sbjct: 95 GPVGAPGDDGAPGSD 109
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 1 GPRGVPGIDGLPGS 42
GP+G PG DGLPG+
Sbjct: 225 GPQGPPGADGLPGN 238
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PG DG PG+D
Sbjct: 144 GPSGAPGTDGNPGND 158
>AC024751-11|ABF71718.1| 302|Caenorhabditis elegans Collagen
protein 46 protein.
Length = 302
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 1 GPRGVPGIDGLPGS 42
GP G+PG DGLPG+
Sbjct: 105 GPPGIPGRDGLPGT 118
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP GVPG +G PG+D
Sbjct: 96 GPAGVPGQEGAPGND 110
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP GVPG +G PG+D
Sbjct: 96 GPAGVPGQEGAPGND 110
>Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical
protein K02B12.3 protein.
Length = 425
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 367 NQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ 498
NQD+G+ CV KF T +++ C + Y ++ GQ
Sbjct: 61 NQDVGFQSKCVGKFDTGSMATMNMDVACAF-DEISAKYVIAAGQ 103
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 1 GPRGVPGIDGLPGS 42
GP+G PG DG PGS
Sbjct: 236 GPQGAPGTDGQPGS 249
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP GVPGI G PG D
Sbjct: 173 GPPGVPGITGAPGLD 187
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP+G PG DG PG+D
Sbjct: 249 GPKGPPGPDGKPGAD 263
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP+G PG DG PG+D
Sbjct: 249 GPKGPPGPDGKPGAD 263
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PG+DG PG++
Sbjct: 232 GPAGAPGVDGQPGAN 246
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PG+ GLPG D
Sbjct: 102 GPPGSPGVPGLPGED 116
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 101 GSLVRKDNQDLRVHKASKEYR--VNEEKSVLLEEMAHLAHQVHH 226
G+L R + +HK +E + E S+ E HL+ Q HH
Sbjct: 636 GTLTRSTSAQNNMHKRIEELEEALRESVSITAEREVHLSQQKHH 679
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP+G PG G+PG+D
Sbjct: 237 GPKGPPGASGIPGND 251
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GPRG PG DG PG D
Sbjct: 97 GPRGQPGDDGEPGRD 111
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PG DG PG D
Sbjct: 280 GPAGAPGTDGAPGPD 294
>Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical
protein C12D8.8 protein.
Length = 295
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PGIDG PG +
Sbjct: 229 GPSGPPGIDGYPGQN 243
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PG DG PG D
Sbjct: 120 GPAGAPGKDGAPGED 134
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PG DG PG+D
Sbjct: 166 GPPGAPGQDGAPGND 180
>AF106577-5|AAC78192.2| 353|Caenorhabditis elegans Hypothetical
protein F46F5.14 protein.
Length = 353
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -2
Query: 201 AISSSNTDFSSFTLYSLEALWTRRSWLSLRTREPSVSF--HSWGTIQSWSTRGT 46
A+ TDF + W R WL+ P + F H W + Q T T
Sbjct: 229 AMMGVGTDFGKVRILKKGTGWARDGWLTSMMWHPEIDFMIHGWKSNQLKPTPNT 282
>AF068721-4|AAC19260.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1055.2 protein.
Length = 298
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = -2
Query: 201 AISSSNTDFSSFTLYSLEALWTRRSWLSLRTREPSVS--FHSWGTIQ 67
AI +TDF + W + WL+ P + FH W T Q
Sbjct: 172 AIFGVSTDFGKVRIMKKGTGWAKDGWLTSMMWHPELDFMFHGWKTNQ 218
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 1 GPRGVPGIDGLPGSD 45
GP G PG DG PG D
Sbjct: 133 GPAGAPGKDGAPGED 147
>AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered
cuticle protein 2 protein.
Length = 311
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 1 GPRGVPGIDGLPGS 42
GP G+PG DGLPG+
Sbjct: 243 GPPGLPGPDGLPGT 256
>AC087081-13|AAK66033.1| 253|Caenorhabditis elegans Hypothetical
protein Y82E9BL.6 protein.
Length = 253
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 184 YRFLLVHPVFLGSLVDPEVLVVLADQGTLGLLSFLGHHSILEH 56
YR L+ V +++ P V++++ G + +L+F HS+L H
Sbjct: 75 YRILIAGAVVCLNVLFPVVMILMFLGGWMNILAFAVIHSLLVH 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,724,591
Number of Sequences: 27780
Number of extensions: 289353
Number of successful extensions: 2167
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2141
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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