Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M15
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    34   0.088
At1g72760.1 68414.m08413 protein kinase family protein contains ...    30   1.1  
At1g47450.1 68414.m05260 expressed protein                             29   3.3  
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ...    28   5.8  
At5g41120.1 68418.m04999 esterase/lipase/thioesterase family pro...    28   5.8  
At4g29310.1 68417.m04190 expressed protein                             28   5.8  
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea...    28   5.8  
At3g52490.1 68416.m05772 heat shock protein-related contains sim...    28   5.8  
At3g06520.1 68416.m00756 agenet domain-containing protein contai...    28   5.8  

>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 11/39 (28%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -2

Query: 240 ICSGAW-CTWWARWAISSSNTDFSSFTLYSLEALWTRRS 127
           +C+  W C+WW+++  + + +D+  F +Y  E L+++R+
Sbjct: 41  VCTQGWECSWWSKYCCNQTISDY--FQVYQFEQLFSKRN 77


>At1g72760.1 68414.m08413 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 697

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +1

Query: 289 PQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRK-FSTMPFLFCDL---NDVCNY 456
           PQC   HV+L D     + D  ++AH   L + G C RK       +  D+   N + NY
Sbjct: 43  PQCVLIHVQLGDTGGHFHQDNPDEAHEFFLPFRGFCARKGIIAKEVILHDIDISNAIVNY 102

Query: 457 ASRN 468
            + N
Sbjct: 103 ITNN 106


>At1g47450.1 68414.m05260 expressed protein
          Length = 169

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +1

Query: 259 LVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYA----GSCVRK 405
           ++    RE++   +  H +L +G+S +Y+ GN  A ++D+ Y+      CVR+
Sbjct: 105 IINECCREILKMGKDCHFRLVEGWSAMYVYGNSIA-SKDIPYSKQSWNECVRR 156


>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
           zinc dependent protease [Arabidopsis thaliana]
           GI:7650138; contains Pfam profile PF00004: ATPase AAA
           family
          Length = 855

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 131 LRVHKASKEYRVNEEKSVLLEEMAHLAHQVHHAPLQ 238
           L+VH  +K +R  +EK  LL+E+A        A LQ
Sbjct: 497 LKVHARNKFFRSEDEKEELLQEVAENTEDFTGAELQ 532


>At5g41120.1 68418.m04999 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 684

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -1

Query: 163 PVFLGSLVDPEVLVVLADQGTLGLLSFLGHHSILEHQGHHLXLEDHLFQEHRVV 2
           PVFL +L +  V+  LA   + G + ++G+H +L  + H + L  H  +E  ++
Sbjct: 400 PVFLSTLKNGAVVRSLAGIPSEGPVLYVGNHMLLGMELHAIAL--HFLKERNIL 451


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 129 SWLSLRTREPSVS-FHSWGTIQSWSTRGTI 43
           +WL LR     VS +  WG +++W  RG I
Sbjct: 272 AWLILRPHGTCVSSWKPWGRLEAWRERGAI 301


>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 558

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 235 TDYLTGILLVRHSQREVVPQCEPGHVKLW 321
           T+ L+G++    +Q  VV  C  GH+K+W
Sbjct: 487 TEPLSGLMF---TQESVVTACREGHIKIW 512


>At3g52490.1 68416.m05772 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 815

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 623 GQPGMSNVWLWTAITLDGTSHTTHLEM 543
           GQP + ++W  T +T+  TS++  L +
Sbjct: 350 GQPSLESLWCLTTLTIPATSNSLRLSL 376


>At3g06520.1 68416.m00756 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 466

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 437 RSQKRNGIVLNFRTHEPAYPRSWLCA 360
           R Q   G ++  R+ E AY  SW CA
Sbjct: 166 RDQYEKGALVEVRSEEKAYKGSWYCA 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,945,887
Number of Sequences: 28952
Number of extensions: 264566
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)