Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M14
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.2  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   2.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   5.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 465 PSPPTPRSSHMILSPGVA*DRIQ*RVLRGASAENAAASPSTRAHAPPAPSTHKR 304
           P  P+PRSSH +   G+    I  +  +GAS  N     ++R      P+T  R
Sbjct: 338 PFTPSPRSSHTLSCSGLTLVLIGGKQGKGASDSNVYMLDTSRFRLGSVPTTSGR 391


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 393 RVLRGASAENAAASPSTRAHAPPAPSTHKRAP 298
           R     SA  AAA P      PPAPS  ++AP
Sbjct: 13  RAAPARSASTAAALPPRTMAPPPAPSRVQQAP 44


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 470 PARPSTSRGALLHHHHHRS 526
           PA  S S  A  HHHHH S
Sbjct: 108 PAMLSPSTAASQHHHHHSS 126


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 316 HAQESAALAQHALTSASTRGLDAAPGSRPTV 224
           ++Q S    + AL S  T  L + PGSRP+V
Sbjct: 102 YSQPSQPPKEPALPSRGTPSLPSRPGSRPSV 132


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 357 PPRFLRSLLSKLSTVCDLTPH--PDSISCE 440
           PP    S+ ++LS +CD  P   PDS S E
Sbjct: 522 PPESYTSIFAQLSAICDGDPPSLPDSFSPE 551


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
 Frame = -2

Query: 232 PTVPVIHTXXXXXXX--XXXXXXXXXXXAVPATSTNSRAQSTLPAANACAGARRCTDTVH 59
           PTVP   T                     +P TST+    +++P   + + +   T TV 
Sbjct: 193 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVP 252

Query: 58  EATRESTS 35
             +  STS
Sbjct: 253 PTSTSSTS 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,555
Number of Sequences: 5004
Number of extensions: 24316
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)