Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M14
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)                33   0.18 
SB_12112| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_42836| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.23)           29   2.9  
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)                29   2.9  
SB_24598| Best HMM Match : Protamine_3 (HMM E-Value=1.4)               29   2.9  
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       24   6.3  
SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99)           28   6.8  
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)                28   6.8  
SB_34090| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 483 LGRA-GEPSPPTPRSSHMILSPGVA*DRIQ*RVLRGASAENAAASPSTRAHAPPAPSTHK 307
           LGR   +P PP+PRS   +  PG +    Q    R  S E  +  P+  +H PP PS   
Sbjct: 205 LGRPPSKPLPPSPRSKSPM--PGQSLSLPQ----RSDSTEGLSVRPAPYSHLPPCPSAAL 258

Query: 306 RAP 298
           R P
Sbjct: 259 RTP 261


>SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)
          Length = 696

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 349 VHAGTRTTSAEHAQESAALAQHALTSASTRGLDAAPGSRPTVPVIH 212
           +H G+R  + E  Q +   + H   S   R L+   GS+P + V H
Sbjct: 286 IHVGSRDVAEEDTQSTGLASSHGAASPEKRRLEQQKGSQPPLRVSH 331


>SB_12112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 370 RKRGGVAVHAGTRTTSAEHAQESAALAQHALTSASTRGLDAAPGS 236
           R RG + VH   R+     A++ A +A    TSA  RG+   P S
Sbjct: 9   RARGVIPVHVSARSWRHSRARQRALVASFPCTSARARGVIPVPVS 53



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 397 VESFERSERRKRGGVAVHAGTRTTSAEHAQESAALAQHALTSASTRGL 254
           V SF  +  R RG + V    R+     A++ A +A    TSA  RG+
Sbjct: 34  VASFPCTSARARGVIPVPVSARSWRHSRARQRALVASFPCTSARARGV 81


>SB_42836| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.23)
          Length = 522

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 304 SAALAQHALTSASTRGLDAAPGSRPTVPVIHT 209
           +AALA  A ++A    L AA G+R T+P+ H+
Sbjct: 236 AAALAIKATSNAKENALSAAHGARYTIPLDHS 267


>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
          Length = 496

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -3

Query: 477 RAGEPSPPTPRSSHMILSPGVA*DRIQ*RVLRGASAENAAASPSTRAHAPPAPSTHKRAP 298
           R+  P PPTP SS   L  G    +   + LR  S++    S S  + + P P    R P
Sbjct: 155 RSEMPLPPTPSSSSESLPSGT---KSPTKPLRSRSSDELVKSNSESSKSNPVPRPRNRPP 211


>SB_24598| Best HMM Match : Protamine_3 (HMM E-Value=1.4)
          Length = 407

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 384 RGASAENAAASPSTRAHAPPAPSTHKRAPR 295
           RG+ AE  A + S++  +P AP T+K A R
Sbjct: 210 RGSVAEKKATTSSSKRPSPSAPETNKTAKR 239


>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 474 AGEPSPPTPRSSHMILSPGVA*DRIQ*RVLRGASAENAAASPSTRAHAPPAPST 313
           AG P+PP P    M+  P +     Q  V  G S++ A  SPS+ +  P   ST
Sbjct: 310 AGVPAPPPPPPPPMLGGPKIKTSDSQASVGSG-SSQAAVNSPSSNSLTPSESST 362


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 24.2 bits (50), Expect(2) = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 461 DGSPARPSTSRGALLHHHHH 520
           +  P R   ++  L HHHHH
Sbjct: 219 EAPPIRHLKTKTILYHHHHH 238



 Score = 22.2 bits (45), Expect(2) = 6.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 506 HHHHHR 523
           HHHHHR
Sbjct: 236 HHHHHR 241


>SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99)
          Length = 612

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 422 GLNIM*DERGVGGDGSPARPSTSRGALLHHHHH 520
           GL ++   +G+ G+     P+  +    HHHHH
Sbjct: 144 GLKMLQQMKGMQGNNEQQEPTDEQHHKRHHHHH 176


>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
          Length = 650

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 403 HTVESFERSERRKRGGVAVHAGTRTTSAEHAQESAALAQHALTS 272
           HT  S +R     +G +A+ + T   S      S+   QHA TS
Sbjct: 384 HTAASTQRMSSGSKGSLALSSHTTLPSTSQQPSSSTSKQHASTS 427


>SB_34090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 349 VHAGTRTTSAEHAQESAALAQHALTSASTRGLDAAPGSRPTVPVIH 212
           +H G RT+  +  +E   LA      A+  G+D  P  +P+ P +H
Sbjct: 131 LHRGKRTSVKQLTKELEMLASQMQPDATGFGMDIEP-PKPSFPKVH 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,571
Number of Sequences: 59808
Number of extensions: 230111
Number of successful extensions: 1668
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)