Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M14
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 29 1.8
At4g22360.1 68417.m03232 SWIB complex BAF60b domain-containing p... 29 2.4
At5g18910.1 68418.m02246 protein kinase family protein contains ... 25 2.9
At5g66870.1 68418.m08430 LOB domain family protein / lateral org... 28 4.2
At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger) fa... 23 5.3
At1g27710.1 68414.m03387 glycine-rich protein 28 5.6
At3g01516.1 68416.m00079 expressed protein 24 7.0
At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ... 27 7.4
At5g21940.1 68418.m02547 expressed protein supported by full len... 27 7.4
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ... 27 9.7
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 27 9.7
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF... 27 9.7
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -3
Query: 462 SPPTPRSSHMILSPGVA*DRIQ*RVLRGASAENAAASPSTRAHAPPAPSTHKRAP 298
SPP P SS M SP V R ++ SPS RA++PP P K +P
Sbjct: 406 SPPPPPSSKM--SPTV-------RAYSPPPPPSSKMSPSVRAYSPPPPPYSKMSP 451
>At4g22360.1 68417.m03232 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 385
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 393 RVLRGASAENAAASPSTRAHAPPAPSTHKRAPRWHSTR*PALAR 262
R + SA A+AS ++H PP PS+H++ P +A+
Sbjct: 57 RAHQNPSASVASASSVQQSHPPPPPSSHQQQNLHSGVNVPPMAK 100
>At5g18910.1 68418.m02246 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 511
Score = 25.4 bits (53), Expect(2) = 2.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 446 RGVGGDGSPARPSTSRGALLHHHHH 520
R + + S + STS + HHHHH
Sbjct: 80 RSIEAETSSSVVSTSDSSETHHHHH 104
Score = 21.8 bits (44), Expect(2) = 2.9
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 506 HHHHHRS 526
HHHHH S
Sbjct: 102 HHHHHHS 108
>At5g66870.1 68418.m08430 LOB domain family protein / lateral organ
boundaries domain family protein (LBD36) identical to
SP|Q9FKZ3 Putative LOB domain protein 36 {Arabidopsis
thaliana}; similar to lateral organ boundaries (LOB)
domain-containing proteins from Arabidopsis thaliana
Length = 313
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 470 PARPSTSRGALLHHHHHRSIIFPLASISMG 559
P RPS+S ++L HHH + P+ +I G
Sbjct: 131 PQRPSSSSASVLTQHHHN--LLPMMAIPTG 158
>At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL6 [Arabidopsis thaliana] GI:4928403; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 217
Score = 23.4 bits (48), Expect(2) = 5.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 503 LHHHHHRSII 532
+HHHHH II
Sbjct: 107 IHHHHHHVII 116
Score = 23.0 bits (47), Expect(2) = 5.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 467 SPARPSTSRGALLHHHHH 520
SP++ + + HHHHH
Sbjct: 96 SPSQTNQDSTRIHHHHHH 113
>At1g27710.1 68414.m03387 glycine-rich protein
Length = 212
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 50 GGFVDGVGATACSGACVGGG 109
GG + G G C G+C GGG
Sbjct: 174 GGVIIGGGGGGCGGSCSGGG 193
>At3g01516.1 68416.m00079 expressed protein
Length = 187
Score = 23.8 bits (49), Expect(2) = 7.0
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +2
Query: 449 GVGGDGSPARPSTSRGALLHHHHH 520
G GG +R HHHHH
Sbjct: 80 GRGGPSKKRMKKINREDRFHHHHH 103
Score = 22.2 bits (45), Expect(2) = 7.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 506 HHHHHR 523
HHHHHR
Sbjct: 100 HHHHHR 105
>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
ZF-HD homeobox protein-related predicted proteins,
Arabidopsis thaliana
Length = 334
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 470 PARP-STSRGALL-HHHHHRSIIF 535
PA+P S S G + HHHHH ++F
Sbjct: 31 PAKPISFSNGIIKRHHHHHHPLLF 54
>At5g21940.1 68418.m02547 expressed protein supported by full length
cDNA GI:22531282 from [Arabidopsis thaliana]
Length = 264
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = +2
Query: 455 GGDGSPARPSTSRGA---LLHHHHHR 523
GGD SP T+ G+ LHHH H+
Sbjct: 185 GGDSSPGSSPTTSGSPPRQLHHHQHQ 210
>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 418
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 366 NAAASPSTRAHAPPAPSTHKRAP 298
N++ +PST + PP PS + AP
Sbjct: 53 NSSPAPSTFIYPPPTPSPYTHAP 75
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 425 LNIM*DERGVGGDGSPARPSTSRGALLHHHHH 520
LN+ R +G D S R G LHHHHH
Sbjct: 427 LNLGATNRDIGDDNSNQR----EGMNLHHHHH 454
>At1g35830.1 68414.m04452 VQ motif-containing protein contains
PF05678: VQ motif
Length = 302
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 470 PARPSTSRGALLHHHHHRSIIFP 538
P PSTS LHHH S+ FP
Sbjct: 169 PLNPSTSSLLNLHHHTTTSMTFP 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,456,097
Number of Sequences: 28952
Number of extensions: 148817
Number of successful extensions: 1035
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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