Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M13
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 59 6e-10
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 58 8e-10
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 58 1e-09
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 46 6e-06
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 40 2e-04
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 6.9
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 6.9
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 9.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.1
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 58.8 bits (136), Expect = 6e-10
Identities = 36/111 (32%), Positives = 56/111 (50%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
T+V + ++EEIFGPVL +T +EA+++ N + YG G+ +F+TN T FS I
Sbjct: 391 TNVQTHNKIWREEIFGPVLAVKTFHTNEEALELANDSEYGLGSGVFSTNPKTLEFFSNNI 450
Query: 182 DVGQVGVNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTVVSF 334
+ G +N V + G + S LG K G + Y LK + +
Sbjct: 451 EAGMCSLN-NYHVVTHELPWIGWKHSGLGVG--LSKHGYNEYMRLKQITQY 498
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 58.4 bits (135), Expect = 8e-10
Identities = 40/108 (37%), Positives = 53/108 (49%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
++VT M KEEIFGPVL + TI+EAI+ N + YG + T N A K S +
Sbjct: 389 SNVTEDMAVGKEEIFGPVLAVIKFKTIEEAIRRGNNSTYGLAAGVHTNNITNAIKVSNAL 448
Query: 182 DVGQVGVNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTV 325
+ G V VN + F G + S +G G GL YT+ K V
Sbjct: 449 EAGTVWVNC-YNLLHHQIPFGGYKESGIGRE--LGSYGLTNYTQTKAV 493
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 57.6 bits (133), Expect = 1e-09
Identities = 36/107 (33%), Positives = 51/107 (47%)
Frame = +2
Query: 5 DVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEID 184
D + M KEEIFGPV+ T DEAI+ N YG FT + A + S E++
Sbjct: 385 DCSENMTIVKEEIFGPVVAISKFKTEDEAIEKANNTTYGLAAMCFTKDLERAHRVSDELE 444
Query: 185 VGQVGVNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTV 325
G V +N + F G + S +G G G++ YT++K V
Sbjct: 445 AGMVFINSTENSDIQA-PFGGIKMSGIGNE--LGSNGIEMYTQIKAV 488
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 45.6 bits (103), Expect = 6e-06
Identities = 31/106 (29%), Positives = 49/106 (46%)
Frame = +2
Query: 8 VTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEIDV 187
VT M EE FGP+ + +E I+ N + G +FT N +T + E++V
Sbjct: 386 VTQDMLVASEETFGPLASVFKFDDTEEVIEWANDSDVGLAGYVFTNNLSTMIHVAKELEV 445
Query: 188 GQVGVNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTV 325
G VG N+ + V SF G + S G G+ G+ + +K +
Sbjct: 446 GLVGANIEM-VDEPFISFGGIKQSGFGKE--AGRLGVQEFMVVKEI 488
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 40.3 bits (90), Expect = 2e-04
Identities = 27/98 (27%), Positives = 45/98 (45%)
Frame = +2
Query: 32 KEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEIDVGQVGVNVP 211
+EE FGPV +T DE + N +P G +F+ + + + + VG VG N
Sbjct: 399 EEETFGPVGALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNTG 458
Query: 212 IPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTV 325
+ V + F G + S G K G+ Y ++K++
Sbjct: 459 L-VSDVLSPFGGVKESGFGREG--SKYGISEYLDIKSL 493
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 527 YLRKNTMRTLRID-YRTHFDSFIIWLSVYYL 616
YLR+N R + +RT F S+I W ++Y++
Sbjct: 66 YLRQNRSRLAESNIFRTLFISWIRWDAIYFV 96
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 502 RDEIYTLKIFKKKYYADPKNRLQNTFR*FYHLAVCXLS 615
+D+I+ LK K+ A K R+ ++F +HL V +S
Sbjct: 394 QDDIHALKFLKRWVRASAKARILDSFCIDWHLNVQTMS 431
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 311 ELKTVVSFWRQSDVSHTKAAVS 376
E + +V FWR+ D HT+ +S
Sbjct: 8 EEEKIVEFWREIDAFHTQLKLS 29
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 278 FCGKQGLDFYTELKTVV 328
FC Q DFY+EL++++
Sbjct: 1016 FCSLQNEDFYSELQSII 1032
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,116
Number of Sequences: 5004
Number of extensions: 46311
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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