Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M13
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 107 6e-24
SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 107 6e-24
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 60 1e-09
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 46 2e-05
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 44 8e-05
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 44 1e-04
SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12) 41 7e-04
SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08) 38 0.007
SB_52934| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_31876| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.0
SB_38806| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28) 30 1.4
SB_26122| Best HMM Match : Aldedh (HMM E-Value=0) 30 1.4
SB_576| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.4
SB_29864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_6960| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 29 2.4
SB_14797| Best HMM Match : RVT_1 (HMM E-Value=7.9e-33) 29 3.1
SB_8080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54068| Best HMM Match : RVT_1 (HMM E-Value=0.92) 29 4.1
SB_19795| Best HMM Match : RVT_1 (HMM E-Value=1.3) 29 4.1
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_10851| Best HMM Match : Chitin_bind_1 (HMM E-Value=4.4) 29 4.1
SB_10718| Best HMM Match : RVT_1 (HMM E-Value=2.3e-33) 29 4.1
SB_9873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18) 29 4.1
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 28 5.5
SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29) 28 5.5
SB_32070| Best HMM Match : RVT_1 (HMM E-Value=2.4e-15) 28 7.2
SB_25892| Best HMM Match : PADR1 (HMM E-Value=5.3) 28 7.2
>SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 107 bits (258), Expect = 6e-24
Identities = 46/73 (63%), Positives = 62/73 (84%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
++VTP M CYKEEIFGPVLV L +T+++A+++IN NPYGNGTAIFT +GA ARKF+ +
Sbjct: 123 SNVTPEMTCYKEEIFGPVLVALNADTLEDAVEIINRNPYGNGTAIFTKSGAIARKFAQKA 182
Query: 182 DVGQVGVNVPIPV 220
+VGQ+G+NVP+ V
Sbjct: 183 NVGQIGINVPVVV 195
>SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 107 bits (258), Expect = 6e-24
Identities = 46/73 (63%), Positives = 62/73 (84%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
++VTP M CYKEEIFGPVLV L +T+++A+++IN NPYGNGTAIFT +GA ARKF+ +
Sbjct: 123 SNVTPEMTCYKEEIFGPVLVALNADTLEDAVEIINRNPYGNGTAIFTKSGAIARKFAQKA 182
Query: 182 DVGQVGVNVPIPV 220
+VGQ+G+NVP+ V
Sbjct: 183 NVGQIGINVPVVV 195
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = +2
Query: 194 VGVNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQ 292
+G+NVPIPVPL MFSF+G+RGS+LG +HF GKQ
Sbjct: 1 IGINVPIPVPLPMFSFTGSRGSFLGDSHFYGKQ 33
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/102 (33%), Positives = 51/102 (50%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
T+V P+ + EE+FGPVLV L T EA+ + N +G G +++T N + A + +
Sbjct: 993 TNVQPVSKIVMEEVFGPVLVVLTFRTAKEAVAIANNTNFGLGASVWTENLSLAMEVGLSM 1052
Query: 182 DVGQVGVNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFY 307
G V +N + F G R S G + GK+GL Y
Sbjct: 1053 KAGAVWINGHNLFDAAA-GFGGYRESGYGRDG--GKEGLYEY 1091
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/67 (40%), Positives = 35/67 (52%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
+DVT M KEEIFGPV + ++DE I+ N YG +FT N TA S+ +
Sbjct: 695 SDVTDDMRIAKEEIFGPVQQLIKFKSVDEVIERANNTTYGLAAGVFTKNIDTAIAVSSGL 754
Query: 182 DVGQVGV 202
G V V
Sbjct: 755 RAGTVWV 761
>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 47.2 bits (107), Expect = 1e-05
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
T V P + EIFGP+L + V+++D+AI IN IF+ + ++
Sbjct: 290 TGVKPSDPVMENEIFGPILPIVSVDSLDDAIDFINDRDKPLALYIFSNKQESIKRIQENT 349
Query: 182 DVGQVGVN-VPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELK 319
G N V I L F G GS +G H GK + +T K
Sbjct: 350 SSGGFCANDVVIHAALETLPFGGVGGSGMGAYH--GKHSFEAFTHKK 394
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +2
Query: 5 DVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEID 184
+ T M KEEIFGPV+ L T +EA+ N +G IFT + A + +
Sbjct: 643 ECTDDMTVVKEEIFGPVMTVLTFQTEEEAVTRANNTTFGLAGGIFTRDLNRAHRVIGSLQ 702
Query: 185 VGQVGVN----VPIPVPLSMFSFSG 247
G +N P+ VP + SG
Sbjct: 703 AGTCWINSFNITPVEVPFGGYKMSG 727
>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 528
Score = 44.4 bits (100), Expect = 8e-05
Identities = 31/106 (29%), Positives = 51/106 (48%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
TDV+P M KEE FGP+ + T EA+ + N+ G ++ + + + + +
Sbjct: 371 TDVSPDMLVCKEETFGPLAPLVRFKTEAEAVAIANSTQSGLAGYFYSQDLSQVWRVAEAL 430
Query: 182 DVGQVGVNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELK 319
+VG VGVN + + + F G + S LG + G+ Y E K
Sbjct: 431 EVGLVGVNESM-ISTEVAPFGGWKQSGLGIEG--SRYGIHEYLETK 473
>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 421
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/102 (27%), Positives = 45/102 (44%)
Frame = +2
Query: 20 MECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEIDVGQVG 199
M + EEIF PV+ +T +E I + N +G + ++ N + + E+ G VG
Sbjct: 316 MRIFNEEIFAPVIAVYKFSTDEEVINLANKTRFGLASYFYSQNTSRVFNIADELQYGIVG 375
Query: 200 VNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTV 325
+N + + F G + S G GLD Y +K V
Sbjct: 376 INSGL-ISAENVPFGGVKHSGFGREG--SFYGLDDYINIKYV 414
>SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12)
Length = 211
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEI 181
+DV M +EEIFGPV+ +++ I+ N YG ++ T N A S +
Sbjct: 119 SDVQDNMRIAQEEIFGPVMQIFRFKDMNDIIERANKTTYGLAGSVMTKNLENALMLSNSL 178
Query: 182 DVGQVGVN 205
VG V VN
Sbjct: 179 RVGTVWVN 186
>SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)
Length = 266
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +2
Query: 8 VTPIMECYKEEIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKF--SAEI 181
V M+ Y+EE FGPV+ L I E + ++ + YG ++F+ N ++ S
Sbjct: 134 VNSTMKIYEEEQFGPVVPILSFKDIQEPLDYVSESNYGQQVSLFSKNPSSLAPLIDSLVN 193
Query: 182 DVGQVGVNVPIPVPLSMFSFSGTRGSYLGT 271
V +V +N + F G + S + T
Sbjct: 194 QVCRVNINTKCQRGPDVLPFVGRKDSAVST 223
>SB_52934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 36.3 bits (80), Expect = 0.021
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +2
Query: 2 TDVTPIMECYKEEIFGPVLVCLFVNT--IDEAIQMINANPYGNGTAIFTTNGATARKFSA 175
T+V M KEE FGPV++ + ++ ++ N YG + +FT + + A + +
Sbjct: 149 TNVEDDMFIAKEESFGPVVIISKFDDGDVEGVLESANGTEYGLASGVFTKDMSKALRVAD 208
Query: 176 EIDVGQVGVNVPIPVPLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTV 325
++ G VN ++ F G + S G + G + L+ Y + K +
Sbjct: 209 ALEAGTCFVNTYNKTDVAA-PFGGCKQSGFGKD--LGMEALNEYLKTKVI 255
>SB_31876| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 630
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/108 (21%), Positives = 54/108 (50%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEIDVGQVGVNVPIPV 220
I GP+L +++N++ + ++ A+ Y + T I+ G+++++ S ++ + V +
Sbjct: 413 ILGPLLFVIYINSLPDVLESCCASLYADDTVIY-CYGSSSKQLSDNLNQDLLAVAKWMDD 471
Query: 221 PLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTVVSFWRQSDVSHTK 364
+ T+ LG+N + L+ +L +S + S+VS+ K
Sbjct: 472 HKLTLNLEKTKCMLLGSN-----RKLESKIKLSVSISNYNVSNVSNFK 514
>SB_38806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/108 (21%), Positives = 54/108 (50%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEIDVGQVGVNVPIPV 220
I GP+L +++N++ + ++ A+ Y + T I+ G+++++ S ++ + V +
Sbjct: 247 ILGPLLFVIYINSLPDVLESCCASLYADDTVIY-CYGSSSKQLSDNLNQDLLAVAKWMDD 305
Query: 221 PLSMFSFSGTRGSYLGTNHFCGKQGLDFYTELKTVVSFWRQSDVSHTK 364
+ T+ LG+N + L+ +L +S + S+VS+ K
Sbjct: 306 HKLTLNLEKTKCMLLGSN-----RKLESKIKLSVSISNYNVSNVSNFK 348
>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
Length = 1239
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIF 139
+ GP+L L+VN + E + ++ + Y N T +
Sbjct: 581 VLGPLLFNLYVNDLSEHLSLVTCHQYANDTTFY 613
>SB_26122| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 462
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 38 EIFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEIDVG 190
E+ GPV+ + + EA+ +N YG +I++ +G A + + I G
Sbjct: 399 EVQGPVVRIIPFRSESEALSGVNVTAYGLSASIWSKDGQRAHRLAQRIRAG 449
>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1444
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIF 139
+ GPVL L+VN + E + ++ + Y + T +
Sbjct: 873 VLGPVLFNLYVNDLSEHLSLVTCHQYADDTTFY 905
>SB_29864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIF 139
+ GPVL L+VN + E + ++ + Y + T +
Sbjct: 75 VLGPVLFNLYVNDLSEHLSLVTCHQYADDTTFY 107
>SB_6960| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 229
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIF 139
+ GPVL L+VN + E + ++ + Y + T +
Sbjct: 115 VLGPVLFNLYVNDLSEHLSLVTCHQYADDTTFY 147
>SB_14797| Best HMM Match : RVT_1 (HMM E-Value=7.9e-33)
Length = 252
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTN 148
+ GPVL L++N + + Q+++ N + + + +F +N
Sbjct: 169 VLGPVLFLLYINDFNNSSQILDFNIFADDSNLFYSN 204
>SB_8080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTN 148
+ GPVL L++N +++ Q ++ N + + + +F +N
Sbjct: 169 VLGPVLFLLYINDFNDSSQTLDFNIFADDSNLFYSN 204
>SB_54068| Best HMM Match : RVT_1 (HMM E-Value=0.92)
Length = 208
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/48 (22%), Positives = 30/48 (62%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEID 184
I GP+L +++N++ + ++ A+ Y + T I+ G+++++ S ++
Sbjct: 75 ILGPLLFVIYINSLPDVLESCCASLYADDTVIY-CYGSSSKQLSDNLN 121
>SB_19795| Best HMM Match : RVT_1 (HMM E-Value=1.3)
Length = 171
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/48 (22%), Positives = 30/48 (62%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEID 184
I GP+L +++N++ + ++ A+ Y + T I+ G+++++ S ++
Sbjct: 75 ILGPLLFVIYINSLPDVLESCCASLYADDTVIY-CYGSSSKQLSDNLN 121
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/48 (22%), Positives = 30/48 (62%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEID 184
I GP+L +++N++ + ++ A+ Y + T I+ G+++++ S ++
Sbjct: 545 ILGPLLFVIYINSLPDVLESCCASLYADDTVIY-CYGSSSKQLSDNLN 591
>SB_10851| Best HMM Match : Chitin_bind_1 (HMM E-Value=4.4)
Length = 186
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 80 IDEAIQMINANPYGNGTAIFTTNGATARKFSAEIDVGQVGVN 205
+DEAI + N + YG +++ + A++ +A++ G V +N
Sbjct: 6 LDEAIALANQSDYGLSGGVWSADLEKAKQVAAKLRTGMVHLN 47
>SB_10718| Best HMM Match : RVT_1 (HMM E-Value=2.3e-33)
Length = 365
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/48 (22%), Positives = 30/48 (62%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEID 184
I GP+L +++N++ + ++ A+ Y + T I+ G+++++ S ++
Sbjct: 295 ILGPLLFVIYINSLPDVLESCCASLYADDTVIY-CYGSSSKQLSDNLN 341
>SB_9873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/48 (22%), Positives = 30/48 (62%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEID 184
I GP+L +++N++ + ++ A+ Y + T I+ G+++++ S ++
Sbjct: 24 ILGPLLFVIYINSLPDVLESCCASLYADDTVIY-CYGSSSKQLSDNLN 70
>SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18)
Length = 483
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/48 (22%), Positives = 30/48 (62%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEID 184
I GP+L +++N++ + ++ A+ Y + T I+ G+++++ S ++
Sbjct: 383 ILGPLLFVIYINSLPDVLESCCASLYADDTVIY-CYGSSSKQLSDNLN 429
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTN 148
+ GPVL L++N + + Q ++ N + + + +F +N
Sbjct: 403 VLGPVLFLLYINDFNNSSQTLDFNIFADDSNLFYSN 438
>SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)
Length = 382
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTN 148
+ GPVL L++N + + Q ++ N + + + +F +N
Sbjct: 303 VLGPVLFLLYINDFNNSSQTLDFNIFADDSNLFYSN 338
>SB_32070| Best HMM Match : RVT_1 (HMM E-Value=2.4e-15)
Length = 345
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 41 IFGPVLVCLFVNTIDEAIQMINANPYGNGTAIFTTNGATARKFSAEIDV-GQVGVNVPIP 217
+ GP L L++N I EA + + + T I+ T + + D+ + G + +
Sbjct: 208 VLGPTLFLLYINDICEASKS-QVRLFADDTIIYRPISTTDDHTALQEDLDAREGTSDDVV 266
Query: 218 VPLSMFSFSGTRGSYLGT 271
V LS+ G R S GT
Sbjct: 267 VHLSVGKLRGLRESVSGT 284
>SB_25892| Best HMM Match : PADR1 (HMM E-Value=5.3)
Length = 130
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 35 EEIFGPVLVCLFVNTIDEAI-QMINANPYGNGTAIFTTN 148
+ + GPVL L+VN + E + + + Y + T +TT+
Sbjct: 56 DTVLGPVLFNLYVNDLIERLGDTVKCHQYADDTTFYTTD 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,363,162
Number of Sequences: 59808
Number of extensions: 332722
Number of successful extensions: 984
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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