Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M12
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   140   1e-34
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   6e-09
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    45   4e-06
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   1.4  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   1.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   2.5  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   4.4  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   4.4  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   5.8  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.8  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    24   7.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  140 bits (338), Expect = 1e-34
 Identities = 70/135 (51%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
 Frame = +1

Query: 1   YIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXX 180
           YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET             
Sbjct: 55  YIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAE 114

Query: 181 XXXXXXD-EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMG 357
                   +   K+P  ++ G N V  L+E KKA+LV+IA DVDPIELV+FLPALC+ MG
Sbjct: 115 AVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMG 174

Query: 358 VPYCIVKGKSRLGAL 402
           VPY IVK K+RLG +
Sbjct: 175 VPYAIVKNKARLGTV 189


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +1

Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
           LR G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +1

Query: 214 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRL 393
           K+ + LR G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  L
Sbjct: 50  KQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELL 108

Query: 394 G 396
           G
Sbjct: 109 G 109


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 392 NRDLPFTIQYGTPIVRQSAGRKSTSSIGS 306
           + +LPF      P+VR S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 374 TIQYGTPIVRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 234
           T+     IV  +AG  + T+S+GS+S A T + A   ST  V  +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 22  KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 123
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 35  SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 133
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 347 RQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVT 249
           +Q +  KS+  +G T+   TTS +  F+T+L T
Sbjct: 633 QQISSNKSSEFVGQTTTEYTTSGSVGFTTTLAT 665


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +1

Query: 94  TAKGLFKILEKYR 132
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 381 TLHDTVRDSHRTAKRWQEEHKFD-WVYVMS 295
           T+H   +DS +  + W   H  D W  ++S
Sbjct: 416 TIHQPSKDSRKPVQSWSYVHSLDFWARLLS 445


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 65  TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 163
           + + RH + P+ ++C  S RN G    +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 20  KRLCYSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 142
           K+L   ++ K R Q T SP       P   + SW + GQ+L
Sbjct: 140 KQLVRDILEKAR-QHTISPLDEQDSGPSSLASSWASVGQRL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,488
Number of Sequences: 5004
Number of extensions: 25996
Number of successful extensions: 72
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)