Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M12
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 149 1e-36
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 122 1e-28
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 122 1e-28
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 50 7e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 49 2e-06
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 41 3e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 41 3e-04
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 34 0.048
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 34 0.048
01_01_0437 - 3293624-3294029,3294094-3294212 29 1.4
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 3.2
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 28 3.2
04_04_0620 + 26656072-26656417,26656585-26657396 27 4.2
02_04_0134 - 20109610-20109984 27 4.2
04_04_0619 + 26652923-26653267,26653440-26654273 27 5.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 149 bits (360), Expect = 1e-36
Identities = 74/133 (55%), Positives = 92/133 (69%)
Frame = +1
Query: 4 IRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXX 183
+RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 54 VRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQA 113
Query: 184 XXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVP 363
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCR M VP
Sbjct: 114 EAEGKTVEA-KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVP 172
Query: 364 YCIVKGKSRLGAL 402
YCIVKGK+RLG++
Sbjct: 173 YCIVKGKARLGSI 185
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 122 bits (293), Expect = 1e-28
Identities = 62/119 (52%), Positives = 78/119 (65%)
Frame = +1
Query: 4 IRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXX 183
+RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 38 VRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQA 97
Query: 184 XXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGV 360
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCR M +
Sbjct: 98 EAEGKTVEA-KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 122 bits (293), Expect = 1e-28
Identities = 65/133 (48%), Positives = 88/133 (66%)
Frame = +1
Query: 4 IRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXX 183
+RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 55 VRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEA------- 107
Query: 184 XXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVP 363
K+P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCR M +P
Sbjct: 108 ----------KKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIP 157
Query: 364 YCIVKGKSRLGAL 402
YCIVKGK+RLG++
Sbjct: 158 YCIVKGKARLGSI 170
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 50.0 bits (114), Expect = 7e-07
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +1
Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
L+ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +1
Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRL 393
L+ G V K + + + L +IA ++ PI+++ +P LC +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDL 99
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRL 393
L+ G V K + + L VIA ++ PI+++ +P LC +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDL 99
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 33.9 bits (74), Expect = 0.048
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 238 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
G K +EK AQL V+A D D + V + ALC V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 33.9 bits (74), Expect = 0.048
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 238 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
G K +EK AQL V+A D D + V + ALC V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>01_01_0437 - 3293624-3294029,3294094-3294212
Length = 174
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 205 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 309
PPP + R GT+++ + KA++ VI HD +
Sbjct: 34 PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 35 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 160
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 386 DLPFTIQYGTPIVRQSAGRKSTSSIGS 306
D+PF Y P++R + GRK + S+G+
Sbjct: 670 DVPFEKVYLHPMIRDAHGRKMSKSLGN 696
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 202 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 312
+PP P + A + +VE KKAQ++ + H +DP
Sbjct: 344 QPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDP 380
>02_04_0134 - 20109610-20109984
Length = 124
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 159 ASKESRRSQGC*ER*AATEKAKHPTRWNQHCYQAC*EEEGTACGHRS*RRP 311
A+ + R Q C E+ AA + + RW + C C + + C RRP
Sbjct: 15 AASRAERRQACSEQGAAKQARRLERRWAKQC--GCRQPQSEWCVANQCRRP 63
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 202 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 312
E P RP + A + +VE +KAQ++ + H +DP
Sbjct: 352 ESPKPRPMSFVAEHPFMFAIVEYEKAQVLFLGHVMDP 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,210
Number of Sequences: 37544
Number of extensions: 194118
Number of successful extensions: 523
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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