Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M12
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   8e-41
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       118   2e-27
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        56   1e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          46   1e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               35   0.029
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   7.6  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  162 bits (394), Expect = 8e-41
 Identities = 76/132 (57%), Positives = 94/132 (71%)
 Frame = +1

Query: 1   YIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXX 180
           Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET             
Sbjct: 60  YVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAE 119

Query: 181 XXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGV 360
                 +E P K+P  ++ G N +T LVE KKAQLVVIAHDVDPIE+V++LPALCR M V
Sbjct: 120 KKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQV 179

Query: 361 PYCIVKGKSRLG 396
           PYCIVKGK+RLG
Sbjct: 180 PYCIVKGKARLG 191


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  118 bits (284), Expect = 2e-27
 Identities = 56/97 (57%), Positives = 66/97 (68%)
 Frame = +1

Query: 106 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQL 285
           LFK+L KYRPET                   +E P K+P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 286 VVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
           VVIAHDVDPIE+V++LPALCR M VPYCIVKGK+RLG
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLG 100


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 24/56 (42%), Positives = 35/56 (62%)
 Frame = +1

Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
           LR G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 217 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGK 384
           +  TLR G   V K + K +   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
           L  G +   K ++K++A L +++++ D    V  + ALC   G+P   V    +LG
Sbjct: 38  LSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93


>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 18  SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 134
           S GC T SS S  A  PV PD    + Q  +  L E+ A
Sbjct: 286 SSGCSTNSSSSQTARFPVIPDTIIANMQSLLPKLDELYA 324


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 9   HPA-SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 134
           HP  S GC T SS S  A  PV PD    + Q     L E+ A
Sbjct: 76  HPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDELYA 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,530,579
Number of Sequences: 59808
Number of extensions: 210880
Number of successful extensions: 517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)