Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M12
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   155   8e-39
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   140   5e-34
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    69   1e-12
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   3e-08
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    49   1e-06
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    41   3e-04

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  155 bits (377), Expect = 8e-39
 Identities = 72/134 (53%), Positives = 92/134 (68%)
 Frame = +1

Query: 1   YIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXX 180
           YIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+             
Sbjct: 61  YIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAE 120

Query: 181 XXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGV 360
                  E   KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCR   V
Sbjct: 121 ARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNV 180

Query: 361 PYCIVKGKSRLGAL 402
           PY I+KGK+ LG +
Sbjct: 181 PYAIIKGKASLGTV 194


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  140 bits (338), Expect = 5e-34
 Identities = 71/134 (52%), Positives = 91/134 (67%)
 Frame = +1

Query: 1   YIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXX 180
           YIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+             
Sbjct: 61  YIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVT--------- 111

Query: 181 XXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGV 360
                      KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCR   V
Sbjct: 112 -----------KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNV 160

Query: 361 PYCIVKGKSRLGAL 402
           PY I+KGK+ LG +
Sbjct: 161 PYAIIKGKASLGTV 174


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 30/47 (63%), Positives = 38/47 (80%)
 Frame = +1

Query: 1   YIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 141
           YIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 164 YIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 22/56 (39%), Positives = 36/56 (64%)
 Frame = +1

Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
           L+ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   YIRIQRQKAVLQRRLKVPPPINQFTQTLD 87
           YIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 164 YIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 226 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
           TLR G   V K + + +  + ++A +V PI++   +P +C    +PY  +  + +LG
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,954,364
Number of Sequences: 27780
Number of extensions: 151735
Number of successful extensions: 358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)