Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M12
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 3    YSHPASKGCVTASSQSAAANQPV 71
            Y H  S+G V   S  +A N PV
Sbjct: 1831 YDHYGSRGSVGRRSVGSARNIPV 1853



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  KAVLQRRLKVPPPINQFTQT 81
           +  L+ ++ VPP I QF+ T
Sbjct: 572 RGTLEVQVMVPPTIQQFSFT 591


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 336 SALPYDGSPVLYREG*ITIGC 398
           + + Y G+ V+++ G ++ GC
Sbjct: 304 TVVAYGGTSVMHQRGKLSAGC 324


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 287 TSCAFFFSTSLVTVL 243
           T C ++FST++  +L
Sbjct: 301 TGCLYYFSTTINPIL 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,481
Number of Sequences: 438
Number of extensions: 1575
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)