Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M12
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 153 4e-38
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 153 4e-38
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 49 1e-06
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 49 1e-06
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 48 2e-06
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 46 1e-05
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 9e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.010
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.010
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.018
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.018
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.018
At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li... 27 3.5
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin... 26 8.2
At3g42780.1 68416.m04469 hypothetical protein hypothetical prote... 26 8.2
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 153 bits (371), Expect = 4e-38
Identities = 78/133 (58%), Positives = 92/133 (69%)
Frame = +1
Query: 4 IRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXX 183
IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 52 IRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQA 111
Query: 184 XXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVP 363
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCR M VP
Sbjct: 112 EAEGKPAES-KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVP 170
Query: 364 YCIVKGKSRLGAL 402
YCIVKGKSRLGA+
Sbjct: 171 YCIVKGKSRLGAV 183
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 153 bits (371), Expect = 4e-38
Identities = 77/133 (57%), Positives = 92/133 (69%)
Frame = +1
Query: 4 IRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXX 183
IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 53 IRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQA 112
Query: 184 XXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVP 363
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCR M VP
Sbjct: 113 EAEGKPSES-KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVP 171
Query: 364 YCIVKGKSRLGAL 402
YCIVKGKSRLGA+
Sbjct: 172 YCIVKGKSRLGAV 184
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +1
Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +1
Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 48.4 bits (110), Expect = 2e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
L+ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +1
Query: 229 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRL 393
L+ G V K + + + L VIA ++ PI+++ LP LC GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 42.7 bits (96), Expect = 9e-05
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 247 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.010
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 238 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.010
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 238 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.018
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 238 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.018
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 238 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.018
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 238 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRTMGVPYCIVKGKSRLG 396
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
{Arabidopsis thaliana}
Length = 1108
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 386 DLPFTIQYGTPIVRQSAGRKSTSSIGS 306
++PF+ Y P++R + GRK + S+G+
Sbjct: 676 EVPFSKVYFHPMIRDAHGRKMSKSLGN 702
>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
phosphoesterase family protein contains Pfam profiles:
PF00149 calcineurin-like phosphoesterase, PF01344 kelch
motif
Length = 881
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 205 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHD 303
P + P + G + VT+ ++ K QL++ AH+
Sbjct: 751 PNARGPGLVTFGPDRVTEFCKRNKLQLIIRAHE 783
>At3g42780.1 68416.m04469 hypothetical protein hypothetical protein
MZB10.16 - Arabidopsis thaliana, EMBL:AC009326
Length = 176
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 220 PNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 333
P L KLV +++VI DVD ++L+L L
Sbjct: 116 PGNLTTEEMDTAKLVVGDDGKIIVIKFDVDSVKLLLLL 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,565,210
Number of Sequences: 28952
Number of extensions: 143969
Number of successful extensions: 405
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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