Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M11
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 30 0.051
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 1.1
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 25 2.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 3.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 3.4
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 24 3.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 4.4
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 23 7.8
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 23 7.8
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 23 7.8
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 23 7.8
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 23 7.8
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 23 7.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 7.8
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 30.3 bits (65), Expect = 0.051
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 138 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 245
N V DG + VVI P F+ P+N S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.8 bits (54), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +3
Query: 198 FFSQPSNGP----SGNYEPISTGPAFVDF 272
F + P+N P SG+Y PI P F F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +1
Query: 40 FSSSPYWPWLPQTECTWSIITLIIIQARFTWWTIVVFH 153
F S P+ P T+ W I ++ + +W +FH
Sbjct: 121 FGLSTSVPFPPVTKMIWQITLFFFLEDTWHYWAHRLFH 158
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.2 bits (50), Expect = 3.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 153 SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 263
SD DH V + P F S+ P + E S P F
Sbjct: 1443 SDVEDDHDVAKSTAPDFETSSHRPERSSEKKSPSPVF 1479
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.2 bits (50), Expect = 3.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 193 SGFAITTWSLLPSDGTPLL 137
S F + W++LP G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 24.2 bits (50), Expect = 3.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 173 RCYCEPGSFLLSTIKRS*RKL*THKHWTGVRR 268
+C EP S STI+ HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 23.8 bits (49), Expect = 4.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 150 PSDGNSDHVVIANPDPFFSQPSNGP 224
P+ GN D+ + P +SQPS P
Sbjct: 85 PAVGNQDYSKPSYSQPSYSQPSQPP 109
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 23.0 bits (47), Expect = 7.8
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 1 DNSDTIRQ*KLSCFSSSPYWPWLPQTECTWSIITL 105
DN DT+ +S S WLP + +TL
Sbjct: 43 DNRDTLSYFNISNLEPSERSEWLPNKRVNAAFVTL 77
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 23.0 bits (47), Expect = 7.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +3
Query: 162 NSDHVVIANPDPFFSQPSNGP 224
N D++ ++ DP +++PS+ P
Sbjct: 467 NGDNIEFSHFDPLYTRPSSHP 487
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 174 VVIANPDPFFSQPSNGPSGNYEPIS 248
V+I + FF + S G NY+PI+
Sbjct: 388 VLILHLKRFFYEASGGTQKNYKPIA 412
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 23.0 bits (47), Expect = 7.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 81 VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 260
+H+ D +PD + VD+ D NSD + + P GP YE + PA
Sbjct: 50 LHITDMHPDIYYEKGSTVDHYCHSYDHNSDDTPLGKSKVGYLSP--GP--GYE-CDSSPA 104
Query: 261 FVD 269
+D
Sbjct: 105 LID 107
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 23.0 bits (47), Expect = 7.8
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 114 PGQVHVVDNSGVPSDGNSDHV--VIANPDPFFSQPSNGPSGNYEPIST 251
P + VV N P+ N HV V A+P+P S PSNGP+ P+ST
Sbjct: 161 PHKAGVVSN---PAAANV-HVLSVAASPNP--STPSNGPA----PVST 198
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 171 HVVIANPDPFFSQPSNGPSGNY 236
HV ++NPD P + S NY
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNY 499
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 150 PSDGNSDHVVIANPDPFFSQPSNGPSGNYE 239
P+D NS +V P + P+ P +YE
Sbjct: 844 PADFNSLNVDFYEPHSYLESPAPEPQPSYE 873
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,561
Number of Sequences: 5004
Number of extensions: 21644
Number of successful extensions: 58
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -