Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M11
(272 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 30 0.25
At4g28690.1 68417.m04099 expressed protein 27 1.8
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 26 4.1
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 25 5.4
At4g24150.1 68417.m03465 expressed protein ; expression supporte... 25 5.4
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 25 5.4
At5g21080.1 68418.m02510 expressed protein predicted proteins - ... 25 7.2
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 25 7.2
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 25 7.2
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 25 7.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 25 7.2
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 25 7.2
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 25 7.2
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 25 7.2
At1g04310.1 68414.m00422 ethylene receptor-related similar to et... 25 7.2
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 25 9.5
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical... 25 9.5
At3g51050.1 68416.m05590 FG-GAP repeat-containing protein 25 9.5
At3g49050.1 68416.m05358 lipase class 3 family protein / calmodu... 25 9.5
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 25 9.5
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 25 9.5
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 25 9.5
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 29.9 bits (64), Expect = 0.25
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 7 SDTIRQ*KLSCFSSSPYWPWLPQTECTWSIITLII-IQA 120
S I + + SC SSP+ PW+P + +I I+ IQA
Sbjct: 96 SKIIEEKRYSCIISSPFTPWVPAVAASHNISCAILWIQA 134
>At4g28690.1 68417.m04099 expressed protein
Length = 448
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +3
Query: 90 VDHNPDYNPGQVHVVDN--SGVPSDGNSDHVVIANPDPFFSQPSNG---PSGNYEPISTG 254
V NP P + + N SG + S VV +NP +PSNG P + + IS G
Sbjct: 235 VQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGVYPPENSVQNISQG 294
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGP 257
NP+P++S P + P+ + S+ P
Sbjct: 316 NPEPYYSSPHSAPAPSSTSFSSAP 339
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 138 NSGVPSDGNSDHVVIANPD 194
N+ VP+D N+ V++ NPD
Sbjct: 661 NTNVPADPNAVRVLVPNPD 679
>At4g24150.1 68417.m03465 expressed protein ; expression supported
by MPSS
Length = 493
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 120 QVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 263
Q + +SG+ + S + DPFFS S+G G AF
Sbjct: 103 QAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAGAAF 150
>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
Length = 531
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 129 VVDNSGVPSDGNSDHVVIANPDPFFSQP 212
V++N +P N HVV+A+P P P
Sbjct: 244 VLENCNLPY-ANHGHVVLADPSPILMYP 270
>At5g21080.1 68418.m02510 expressed protein predicted proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 980
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 144 GVPSDGNSDHVVIANPDPFFSQPSNGPSGNY 236
G P+ N N PFF+ PS+ P N+
Sbjct: 940 GAPAASNICVTEYQNQPPFFNPPSSTPFDNF 970
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 96 HNPD-YNPGQVHVVDNSGVPSDGNSDHVVIANP 191
HNP YN + DN+G G H++ NP
Sbjct: 334 HNPHAYNNPRYQRNDNNGYGPPGGHGHLMAGNP 366
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 96 HNPD-YNPGQVHVVDNSGVPSDGNSDHVVIANP 191
HNP YN + DN+G G H++ NP
Sbjct: 334 HNPHAYNNPRYQRNDNNGYGPPGGHGHLMAGNP 366
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 96 HNPD-YNPGQVHVVDNSGVPSDGNSDHVVIANP 191
HNP YN + DN+G G H++ NP
Sbjct: 334 HNPHAYNNPRYQRNDNNGYGPPGGHGHLMAGNP 366
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 177 VIANPDPFFSQPSNGPSGNYEPISTGPA 260
++A P P+ P+ GP P+S+ PA
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPA 272
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 132 VDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGN 233
VD+ VP G S + P+P + P N P N
Sbjct: 434 VDSLFVPRAGPSSAIHTPQPNPTWIPPQNAPPHN 467
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 132 VDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGN 233
VD+ VP G S + P+P + P N P N
Sbjct: 434 VDSLFVPRAGPSSAIHTPQPNPTWIPPQNAPPHN 467
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = +3
Query: 141 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFV 266
SG SD + F ++G SG Y P GP V
Sbjct: 4 SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVV 45
>At1g04310.1 68414.m00422 ethylene receptor-related similar to
ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
contains Pfam profiles PF01590: GAF domain, PF00512: His
Kinase A (phosphoacceptor) domain
Length = 645
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 31 LSCFSSSPYWPWLPQTECTWSIITLII 111
L+ F+ P+WPW+ + ++T I+
Sbjct: 103 LAGFTYGPHWPWVMTAVTVFKMLTGIV 129
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 11 TLFDNESFRVFLLRRIGHGCRK 76
T+FD FL+R IG GC K
Sbjct: 104 TVFDVHDEAEFLIRVIGSGCSK 125
>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
member of the natural resistance-associated macrophage
protein (NRAMP) metal transporter family, PMID:11500563;
metal transport capacity has not been shown,
PMID:11500563, PMID:1038174
Length = 1294
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 144 GVPSDGNSDHV--VIANPDPFFSQP 212
GVPS GN+D V +AN + S P
Sbjct: 902 GVPSSGNTDTVGAAVANEKKYSSMP 926
>At3g51050.1 68416.m05590 FG-GAP repeat-containing protein
Length = 698
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 58 WPWLPQTECTWS 93
W W QTE TWS
Sbjct: 556 WQWQLQTEATWS 567
>At3g49050.1 68416.m05358 lipase class 3 family protein /
calmodulin-binding heat-shock protein, putative
calmodulin-binding heat-shock protein, Nicotiana
tabacum, PIR:T04107
Length = 477
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 84 HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIA 185
H+V+ P G+ V + VP DG +H+V++
Sbjct: 291 HIVERKP-CRLGRYPPVVKTAVPVDGRFEHIVLS 323
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 5 TLTLFDNESFRVFLLRRIGHGCRKQSAR 88
T+T F ++ + LL R+ G R++SAR
Sbjct: 782 TITTFSSQERIMKLLERVQEGPRRESAR 809
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Frame = +3
Query: 168 DHVVIANPDPFFSQP------SNGPSGNYEPISTGP 257
D +A P QP +NGP N +P+S GP
Sbjct: 252 DRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGP 287
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -1
Query: 167 TIAVRWNTTIVHHVNLAWIIIRVMIDHVHSVCGSHGQYGEEEKHESFHC 21
TIA T I LA++ + +V + QYG +ES+ C
Sbjct: 308 TIATGDGTIIDTGTTLAYLPDEAYSPFIQAVANAVSQYGRPITYESYQC 356
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,271,549
Number of Sequences: 28952
Number of extensions: 124045
Number of successful extensions: 349
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 222240128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -