Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M10
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)                       31   0.14 
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.19 
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              28   1.3  
SB_40968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.3  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         27   2.3  
SB_30444| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_38309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         27   4.1  
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)                      26   7.2  
SB_52446| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    26   7.2  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   7.2  
SB_56210| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_52202| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_32413| Best HMM Match : HEAT (HMM E-Value=0.00039)                  25   9.5  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        25   9.5  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)
          Length = 270

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 93  YWYEFHFVFQVHCVCGRFYFIHPVIICGYLPFFVRISSGYADVGVLVVGFNVIGHFFP 266
           ++ +  FV++    C    F+    +CG+L  F R S G+     L+    +I HF P
Sbjct: 2   HFSQIRFVYRSVLTCYNRSFLKRRFLCGFLAIFGRFSCGFIAASALL---RLIKHFLP 56


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 266 REEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEV 108
           R+E  N  E+ N   +I +   D +   Q+   D+  NKV      +D+ D V
Sbjct: 576 RQEQQNQQESPNLQENINIVLEDCEVPEQVRLEDDSQNKVSTKAKLLDIPDIV 628


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 308 TTEVPVTEGMMESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYA 129
           TT+V  TEG+M+S+   +T    TD +D +     G T     ++T    +    AT   
Sbjct: 523 TTDVTETEGVMQST---VTKENRTDREDLETKTLSGATTAAATVTTAAATVTTAAATVTT 579

Query: 128 V 126
           V
Sbjct: 580 V 580


>SB_40968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 251 NHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVPIR 90
           N  ET++        RG+  K+ +IS     M+K+ AT      K++ +F+PIR
Sbjct: 128 NECETESVRKRCKSTRGNLKKKLRISRPSLNMDKMMATKLYKGKKEKKDFLPIR 181


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 293 VTEGMMESSREEMTNHVETDNQDADIGVARGDTD 192
           V +G+ +   ++  N  + D++D D GV +GD D
Sbjct: 384 VDDGVNKEDVDDGVNDKDVDDEDVDDGVNKGDVD 417


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -1

Query: 302  EVPVTEGMMESSREEMTNHVETDNQ----DADIGVARGDTDKERQISTNDN--WMNKVE 144
            E P T   M  S  E    V+ D+     DA +G     +   RQ S +D   W NK+E
Sbjct: 890  EEPETSVTMSQSEVESLPTVQLDDVSSTIDAPVGTGPSPSSSRRQKSVSDQSMWSNKIE 948


>SB_30444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 191 KERQISTNDNWMNKVEATTYAVDLKDEVEFVPI 93
           K R + TND WM+       A+  +  V+FV +
Sbjct: 23  KTRHLQTNDTWMSNYRKIQEALLTRKAVQFVVV 55


>SB_38309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = -1

Query: 275 ESSREEMTNHVETDNQ----DADIGVARGDTDKERQISTNDNWMNKVEATTYAVD 123
           E   +E  +H ETDN     D D    + D D  R+    DN  N + A  Y  D
Sbjct: 142 EDGYDEYDSHGETDNDDDDGDDDGSGGKDDGDNFRENKVVDNSDNNLAADDYDAD 196


>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 275 ESSREEMTNHVE---TDNQDADIGVARGDTDKERQISTNDNWMNKVEAT 138
           E+S+ +  N  +   T++ D D      D DK++  +TND+  +K   T
Sbjct: 75  EASQSQTVNEDKVPTTNDDDEDKASTTNDDDKDKASTTNDDDQDKASTT 123


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 287 EGMMESSREEMTNHVETDNQDADIGVARGDTDK-ERQISTNDNWMNKVEATTYAVDLKDE 111
           + + ES RE      E   Q  +    +   DK E++I+T +  MNK++  T   D+K+ 
Sbjct: 685 QSVSESKREREAALAEYKKQAEE---KKEQADKVEKRITTYEEAMNKIKDATGVSDIKEV 741

Query: 110 VE 105
           V+
Sbjct: 742 VQ 743


>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
          Length = 761

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -1

Query: 245 VETDNQDADIGVARGDTDK----ERQISTNDN 162
           +++D  D+DI V +GD  K     +Q ST+DN
Sbjct: 112 IDSDTDDSDIVVMKGDRIKACSETKQCSTDDN 143


>SB_52446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 150 SRSDHIRSGLERRSGIRTNTLLSDILF 70
           S S  +RS  ERR  IRT T+   + F
Sbjct: 40  SPSSILRSDFERRYSIRTKTIAGSLFF 66


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 126 HCVCGRFYFIHP--VIICGYLPFFVRISSGY 212
           H   G+F ++    V ICGYLP  V  +SGY
Sbjct: 81  HSSDGKFIYVDQRIVSICGYLPQEVIGTSGY 111


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 167  DNWMNKVEATTYAVDLKDEVEFVPIR 90
            +NW+ K    +YA D K  ++F+P+R
Sbjct: 1251 NNWV-KSFTVSYATDSKKGIKFIPVR 1275


>SB_56210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 129 CVCGRFY-FIHPVIICGYLPFFVRISSGYADVGVLVVGFNV 248
           C    FY  I+P+ I G+LP  + +      VG L+  F++
Sbjct: 6   CFYPMFYRVIYPIFIIGFLPDVLYLPDNRVRVGFLIGYFHL 46


>SB_52202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 129 CVCGRFY-FIHPVIICGYLPFFVRISSGYADVGVLVVGFNV 248
           C    FY  I+P+ I G+LP  + +      VG L+  F++
Sbjct: 63  CFYPMFYRVIYPIFIIGFLPDVLYLPDNRVRVGFLIGYFHL 103


>SB_32413| Best HMM Match : HEAT (HMM E-Value=0.00039)
          Length = 695

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 308 TTEVPVTEGMMESSREE 258
           T+++P+TEG + S R+E
Sbjct: 42  TSDIPLTEGQLRSKRDE 58


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = -1

Query: 287  EGMMESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEV 108
            EGM    RE++    +++ +   +G A+ D    ++ + + N  N+V   T  ++ ++E 
Sbjct: 1937 EGMQRMLREQVNLRADSEEKKNALGRAKEDFINLQKSNVDLNGTNEVLRNT-LIEKENET 1995

Query: 107  EFVPIRY 87
            E++  +Y
Sbjct: 1996 EWLKQQY 2002


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 290 TEGMMESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKV-EATTYAVDLKD 114
           +E   E S EE     E++  D++      +  KE+ I+      NK+ EA+   V+   
Sbjct: 700 SESESEESEEESEEEEESEESDSEESEEEEEEIKEKDIAEQLEEENKISEASEVLVERAS 759

Query: 113 EV 108
           E+
Sbjct: 760 EI 761


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 182  QISTNDNWMNKVEATTYAVDLK 117
            ++   D WM+KVE TT+ V LK
Sbjct: 2056 EVKAMDEWMDKVEDTTF-VQLK 2076


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,123,168
Number of Sequences: 59808
Number of extensions: 143287
Number of successful extensions: 430
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)