Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M10
(311 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 3.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.6
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 21 4.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 4.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 4.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 20 6.0
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 20 6.0
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 151 LFIQLSFVDICRSLSVSPLA 210
L + L+ D+C +L V P+A
Sbjct: 79 LLVSLAVSDLCVALLVMPMA 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKVEATTY 132
D D++ QI T + W+ K+E Y
Sbjct: 25 DVDEKNQILTTNAWL-KLEWVDY 46
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKVEATTY 132
D D++ QI T + W+ K+E Y
Sbjct: 25 DVDEKNQILTTNAWL-KLEWVDY 46
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKVEATTY 132
D D++ QI T + W+ K+E Y
Sbjct: 25 DVDEKNQILTTNAWL-KLEWVDY 46
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKVEATTY 132
D D++ QI T + W+ K+E Y
Sbjct: 25 DVDEKNQILTTNAWL-KLEWVDY 46
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKVEATTY 132
D D++ QI T + W+ K+E Y
Sbjct: 25 DVDEKNQILTTNAWL-KLEWVDY 46
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKVEATTY 132
D D++ QI T + W+ K+E Y
Sbjct: 25 DVDEKNQILTTNAWL-KLEWVDY 46
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 20.6 bits (41), Expect = 4.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 126 HCVCGRFY 149
H VCGRFY
Sbjct: 123 HEVCGRFY 130
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKVEATTY 132
D D++ QI T + W+ K+E Y
Sbjct: 93 DVDEKNQILTTNAWL-KLEWVDY 114
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKVEATTY 132
D D++ QI T + W+ K+E Y
Sbjct: 93 DVDEKNQILTTNAWL-KLEWVDY 114
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 20.2 bits (40), Expect = 6.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 293 VTEGMMESSREEMTNHVETDNQDA 222
V G + EE N E+D QDA
Sbjct: 334 VGSGEIPLEEEEWENENESDYQDA 357
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 20.2 bits (40), Expect = 6.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = -1
Query: 200 DTDKERQISTNDNWMNKV 147
D D++ QI T + W+ ++
Sbjct: 44 DVDEKNQILTTNCWVTQI 61
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,677
Number of Sequences: 438
Number of extensions: 1441
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6595479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
- SilkBase 1999-2023 -