Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M09
         (103 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6YPG5 Cluster: 40S ribosomal protein S11; n=7; Eukaryo...    44   0.001
UniRef50_P62280 Cluster: 40S ribosomal protein S11; n=65; Eukary...    32   2.2  

>UniRef50_A6YPG5 Cluster: 40S ribosomal protein S11; n=7;
           Eukaryota|Rep: 40S ribosomal protein S11 - Triatoma
           infestans (Assassin bug)
          Length = 194

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 4/38 (10%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGM----KRKDMRHSKNVG 102
           ADQTE++FQKQ T+FLNRK G+    K   +R+ +NVG
Sbjct: 2   ADQTERSFQKQPTIFLNRKKGLGVKKKANALRYIRNVG 39



 Score = 32.3 bits (70), Expect = 2.2
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 7   QTEKAFQKQATVFLNRKGGMKRKDMRHSKNVG 102
           +TEKAFQKQ  VFL  K   K K +R  K+VG
Sbjct: 47  ETEKAFQKQPHVFLASKVSSK-KPLRRYKSVG 77


>UniRef50_P62280 Cluster: 40S ribosomal protein S11; n=65;
           Eukaryota|Rep: 40S ribosomal protein S11 - Homo sapiens
           (Human)
          Length = 158

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = +1

Query: 7   QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVG 102
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+G
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIG 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.315    0.127    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,794,116
Number of Sequences: 1657284
Number of extensions: 1027337
Number of successful extensions: 3637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3637
length of database: 575,637,011
effective HSP length: 14
effective length of database: 552,435,035
effective search space used: 10496265665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)