Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M09
         (103 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    28   0.14 
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    28   0.14 
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    25   1.3  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    23   5.4  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    23   7.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    23   7.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    22   9.4  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    22   9.4  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
          S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 7  QTEKAFQKQATVFLNRKGGMKRK 75
          Q+E+AFQKQ  +F N K G  R+
Sbjct: 8  QSERAFQKQPHIFQNAKKGAGRR 30


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
          S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 7  QTEKAFQKQATVFLNRKGGMKRK 75
          Q+E+AFQKQ  +F N K G  R+
Sbjct: 8  QSERAFQKQPHIFQNAKKGAGRR 30


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 102 TNILRMSHILPFHAPLAIEEH 40
           TN+L+M   LP H    I EH
Sbjct: 16  TNVLKMKKPLPLHMRTKIREH 36


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 620

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 6  SDRESVSETGDGVPQSQGGHEKE 74
          S +  V E  DG+ +S+ G EK+
Sbjct: 30 SKKSQVEEEEDGIEESELGEEKD 52


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 75  LPFHAPLAIEEHRRLF 28
           LP HA L ++E  R+F
Sbjct: 273 LPLHAGLTVDEQMRVF 288


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 78  ILPFHAPLAIEEHRRLF 28
           +LP HA L   E RR F
Sbjct: 843 VLPLHASLNTSEQRRCF 859


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 88  NVSYPSFSCPPCD*GTPSPVSET 20
           NVS+PS S PP      S +  T
Sbjct: 157 NVSFPSSSTPPSSDSNFSSIQNT 179


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 64  CPPCD*GTPSPV 29
           CP C  G PSPV
Sbjct: 203 CPTCRFGLPSPV 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.127    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,644
Number of Sequences: 5004
Number of extensions: 4123
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)