Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M09
         (103 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044...    30   0.29 
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955...    30   0.29 
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407...    30   0.29 
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381...    30   0.29 
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529...    27   2.7  
07_01_0485 + 3648995-3649084,3649460-3649631,3649951-3650000           25   6.2  
01_06_1475 + 37634831-37636297                                         25   6.2  
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591     25   8.3  

>07_03_0920 -
          22603868-22603964,22604110-22604222,22604281-22604429,
          22604732-22604832,22604917-22604957,22605584-22605595
          Length = 170

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1  ADQTEKAFQKQATVFLNRKGGMKRK 75
          A+QTEKAF KQ  VFL+ K   K K
Sbjct: 2  AEQTEKAFLKQPKVFLSSKKSGKGK 26


>07_03_0919 -
          22594980-22595111,22595398-22595427,22595522-22595587,
          22596021-22596107,22596868-22596921,22597696-22597762,
          22598099-22598215,22598536-22598637,22598784-22598902,
          22598966-22599049,22599220-22599354,22599470-22599505,
          22599581-22599700,22600557-22600645,22601507-22601596,
          22601629-22601802,22602135-22602235,22602323-22602363,
          22602872-22602883
          Length = 551

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1  ADQTEKAFQKQATVFLNRKGGMKRK 75
          A+QTEKAF KQ  VFL+ K   K K
Sbjct: 2  AEQTEKAFLKQPKVFLSSKKSGKGK 26


>04_04_1135 +
          31140032-31140043,31140552-31140592,31140680-31140780,
          31141113-31141419,31141565-31141661
          Length = 185

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1  ADQTEKAFQKQATVFLNRKGGMKRK 75
          A+QTEKAF KQ  VFL+ K   K K
Sbjct: 2  AEQTEKAFLKQPKVFLSSKKSGKGK 26


>04_04_1134 +
          31137326-31137337,31137964-31138004,31138089-31138189,
          31138489-31138637,31138696-31138808,31138954-31139050
          Length = 170

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1  ADQTEKAFQKQATVFLNRKGGMKRK 75
          A+QTEKAF KQ  VFL+ K   K K
Sbjct: 2  AEQTEKAFLKQPKVFLSSKKSGKGK 26


>04_04_0417 -
          25052305-25052398,25052583-25052672,25052740-25052905,
          25053547-25053647,25053735-25053775,25054170-25054181
          Length = 167

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 1  ADQTEKAFQKQATVFLNRKGGMKRK 75
          A+QTE+AF KQ  VFL  K   K K
Sbjct: 2  AEQTERAFLKQPKVFLCPKKTTKGK 26


>07_01_0485 + 3648995-3649084,3649460-3649631,3649951-3650000
          Length = 103

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 78  ILPFHAPLAIEEHRRLFLKRFLCLIR 1
           ILP +A +AI++ RRL  +R + ++R
Sbjct: 70  ILPVYAAVAIQDARRLERERVVWIVR 95


>01_06_1475 + 37634831-37636297
          Length = 488

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 24  SETGDGVPQSQGGHEKEG 77
           S+  D VP  QGGHE+ G
Sbjct: 50  SDMADLVPSGQGGHEQGG 67


>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
          Length = 573

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 96  ILRMSHILPFHAPLAIEEHRRLFLKRFLCL 7
           + +++H +P H   + ++   L+L R +CL
Sbjct: 290 LTKVAHFIPVHTTYSGKKLAELYLARIMCL 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.127    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,777
Number of Sequences: 37544
Number of extensions: 31162
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)