Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M09
         (103 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...    30   0.24 
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)            30   0.24 
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)            29   0.41 
At3g28770.1 68416.m03591 expressed protein                             26   3.9  
At3g09430.1 68416.m01120 hypothetical protein                          25   6.8  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
          ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1  ADQTEKAFQKQATVFLNRKGGMKRK 75
          A+QTEKAF KQ  VFL+ K   K K
Sbjct: 2  AEQTEKAFLKQPKVFLSSKKSGKGK 26


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1  ADQTEKAFQKQATVFLNRKGGMKRK 75
          A+QTEKAF KQ  VFL+ K   K K
Sbjct: 2  AEQTEKAFLKQPKVFLSSKKSGKGK 26


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1  ADQTEKAFQKQATVFLNRKGGMKRK 75
          A+QTEKAF KQ  VFL+ K   K K
Sbjct: 2  AEQTEKAFLKQPKVFLSSKISGKGK 26


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 3   GSDRESVSETGDGVPQSQGG 62
           G + ES  E GDGV  S GG
Sbjct: 215 GENSESTQEKGDGVEGSNGG 234


>At3g09430.1 68416.m01120 hypothetical protein
          Length = 247

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 85  VSYPSFSCPPCD*GTPSPVSETLSL 11
           + YP+++ PP     PSP S+ L +
Sbjct: 48  IRYPNYNSPPTPVSYPSPQSKILQI 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.127    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,202
Number of Sequences: 28952
Number of extensions: 24538
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,070,560
effective HSP length: 15
effective length of database: 11,636,280
effective search space used: 209453040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)