Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M08
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   0.86 
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    25   1.5  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    25   1.5  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    24   3.5  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    23   6.1  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    23   6.1  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    23   8.0  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    23   8.0  

>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -3

Query: 214 SIPAIDSISHTGIISQFQRDMVNARHSFTKIHIFQISMLPQLF 86
           SI +++S     +  +F+R ++  +  F +  I+QI+ LP+L+
Sbjct: 636 SIRSLESCLEDYLFPEFRRRVICPKKVFEEKCIYQITSLPRLY 678


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 143 SVDHITLKLGDNTR--VTDGVNCRYRKQKYEISC 238
           SVD   L++ +N R  +   +  R RK KYEI C
Sbjct: 33  SVDSTLLEIDENKREALEKYIEERDRKMKYEIEC 66


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 143 SVDHITLKLGDNTR--VTDGVNCRYRKQKYEISC 238
           SVD   L++ +N R  +   +  R RK KYEI C
Sbjct: 33  SVDSTLLEIDENKREALEKYIEERDRKMKYEIEC 66


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 240 QQDISYF--CFLYLQLTPSVTRVLSPNFNVIWSTLDTASPKFI 118
           +Q IS F  C + L  T +V  +L   F+ +    +T+SPKF+
Sbjct: 369 KQLISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSPKFV 411


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 274 SSKPKCPITQLPTGYFVFLLSIPAIDSISH 185
           +SK K    + PT   +  ++ P IDS++H
Sbjct: 75  TSKYKLHFYETPTNLRLIFITNPKIDSLTH 104


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 28  EKVYSSQPHLVGVPNESDFKIVEEA 102
           E +     ++VG+P  + FK++EEA
Sbjct: 202 ESIIGDFSNVVGLPIRATFKLMEEA 226


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 186 TRVLSPNFNVIWSTLDTASPKFISFKS 106
           +R +  N+N++ ST  TAS + +S  S
Sbjct: 157 SRTIGSNYNMLQSTKSTASQRRMSDSS 183


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 244 LPTGYFVFLLSIPAIDSISHTGI 176
           L T Y+ FL+++ A  ++SH  +
Sbjct: 205 LDTAYYGFLMTVIAFIAVSHCSV 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,233,519
Number of Sequences: 5004
Number of extensions: 24042
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)