Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M08
(279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0723 + 35755407-35755457,35755653-35756321 28 1.2
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663... 27 1.6
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 26 4.9
04_03_0477 - 16393764-16394054,16394424-16394672,16394849-163949... 26 4.9
11_04_0176 - 14536305-14537315 25 6.5
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707... 25 6.5
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 25 6.5
03_02_0307 - 7293150-7293488,7293877-7294248,7294640-7294690,729... 25 6.5
01_01_0452 - 3357687-3358332,3358779-3359641 25 6.5
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 25 8.6
06_01_0402 - 2882898-2883057,2883393-2883557,2883662-2883906 25 8.6
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 25 8.6
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 25 8.6
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331... 25 8.6
>03_06_0723 + 35755407-35755457,35755653-35756321
Length = 239
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 219 CFLYLQLTPSVTRVLSPNFNVIWSTLDTASPKFISFKSACFLNYFEITFV 70
C L + L P +T + SP+ NVI ++ F+S + L++F ++
Sbjct: 109 CCLSVSLGPVITFMTSPDMNVILKGAVASTVIFLSATTTAALHWFVSPYI 158
>10_07_0079 +
12665141-12665167,12665613-12665702,12665783-12666310,
12666341-12667741
Length = 681
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -3
Query: 247 QLPTGYFVFLLSIPAIDSISHTGIISQFQRDMVN---ARH-SFTKIH 119
QLP F + P I I H + Q QR+M N +RH +F K+H
Sbjct: 437 QLPNLDFFVVDDAPCIKQIGHCLLFEQGQRNMDNKKSSRHVAFPKLH 483
>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 231 ISYFCFLYLQLTPSVTRVLSPNFNV 157
+SYF FLY +T +SPN V
Sbjct: 1002 VSYFSFLYFTYYGMMTVAISPNHEV 1026
>04_03_0477 -
16393764-16394054,16394424-16394672,16394849-16394989,
16395654-16395795,16396287-16396665,16397178-16397436,
16398232-16398288
Length = 505
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -3
Query: 202 IDSISHTGIISQFQRDMVNARHS-----FTKIHIFQISMLPQLF*NH 77
+DSI H GI+ FQ + +A S FT ++++++ +L H
Sbjct: 53 VDSIQHLGIVHLFQEQIEDALMSIHESEFTSSSLYEVALRFRLLREH 99
>11_04_0176 - 14536305-14537315
Length = 336
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = -3
Query: 274 SSKPKCPITQLPTGYFVFLLSIPAIDSISHTGIISQFQRDMVNARHSFTKIHIFQISMLP 95
SS PKC T L F L S H ++ D+V + K+ +++ P
Sbjct: 57 SSFPKCGTTWLKALAFATLNRSTYPPSDEHHPLLEHNPHDLVGFLEIYPKLELYESLPSP 116
Query: 94 QLF*NH 77
+L H
Sbjct: 117 RLLSTH 122
>09_06_0194 -
21469815-21470117,21470226-21470376,21470463-21470700,
21470784-21470991,21471107-21471309,21471407-21471508,
21471622-21472945
Length = 842
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 259 CPITQLPTGYFVFLLSIP 206
C TQ T F+FLLS+P
Sbjct: 6 CTCTQAATAIFLFLLSLP 23
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 41 VHNXIWSVYLTKVISK*LRKHADLKDMNFGEAVSSV--DHITLKLGDNTRVTDG 196
+HN ++S T +++ KH ++ A++S HI ++ D+ T G
Sbjct: 759 LHNRVYSTSATDIVNTTAEKHGQVEASTNNAAIASTSESHIQARIEDSAVNTIG 812
>03_02_0307 -
7293150-7293488,7293877-7294248,7294640-7294690,
7295293-7295365,7295931-7296166
Length = 356
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -1
Query: 156 IWSTLDTA---SPKFISFKSACFLNYFEITFVRYTDQMXL*TIYFFA 25
+W T D+A PK +SF S LNY + Y +Y+FA
Sbjct: 131 LWFTRDSAYDEDPKLLSFLSQTSLNYEPVHQSSYIPLPASDIMYWFA 177
>01_01_0452 - 3357687-3358332,3358779-3359641
Length = 502
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 252 LPSFQQDISYFCFLYLQLTPSVTRVLSPNFNVIWSTLDTASPKFISFKSACFLNY 88
LP F Q S L + TPS + P+ N+ P F++F + F NY
Sbjct: 16 LPPFSQWRSNAMSLCICPTPSASESSQPSVNLSVVKTPPTQPSFVTF--SIFANY 68
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -3
Query: 169 QFQRDMVNARHSFTKIHIFQI-SMLPQ 92
++QRD + A + + K+ +FQ+ S +PQ
Sbjct: 563 KYQRDYIRALYGWLKLTLFQVDSNIPQ 589
>06_01_0402 - 2882898-2883057,2883393-2883557,2883662-2883906
Length = 189
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 264 RNVPLPSFQQDISYFCFLYLQLTPSVTRVL 175
++VPLP ++ ++ C L PSV +L
Sbjct: 40 QHVPLPEYRDNLRAICALLAAAWPSVVVIL 69
>05_03_0369 - 13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 140 TQLHQNSYLSNQHASSTILKSLSLGTPTK 54
+QLHQNS+L + + +L+ + LGT K
Sbjct: 936 SQLHQNSFLDD--GNGLLLRPVLLGTQPK 962
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 268 KPKCPITQLPTGYFVFLLSIPAIDSISHTGIISQFQ 161
KP C ITQLPTG F L++ + + + ++Q +
Sbjct: 883 KP-CLITQLPTGGRGFYLAVQVLGFLHDSESLAQLE 917
>01_06_0898 -
32832665-32832724,32832761-32832815,32832957-32833135,
32833218-32833328,32833600-32833647,32833810-32833949,
32834402-32834539,32834660-32834804,32834936-32835002,
32835226-32835329,32835444-32835647
Length = 416
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3
Query: 277 ESSKPKCPITQLPTGYFVFLLSIPAIDSISHTGIISQFQRDMVNARHSF 131
+S+K K P+T + F + P + S G + F+ ++ + HSF
Sbjct: 341 KSNKSKSPVTTIQYRTFSLVARCPVLLSCVQNGNLFFFRASVLLSVHSF 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,473,606
Number of Sequences: 37544
Number of extensions: 134717
Number of successful extensions: 323
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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