Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M08
         (279 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11846| Best HMM Match : Collagen (HMM E-Value=0.59)                 30   0.25 
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)                   28   1.0  
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)                 27   2.3  
SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_45701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.4  
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            26   5.4  
SB_9740| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.1  
SB_29927| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_52790| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_49376| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_53054| Best HMM Match : NHase_beta (HMM E-Value=3.6)                25   9.4  
SB_48060| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_11846| Best HMM Match : Collagen (HMM E-Value=0.59)
          Length = 487

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 68  LTKVISK*LRKHADLKDMNFGEAVSSVDHITLKLGDNTRVTDGVNCRYRK-QKY 226
           ++K +SK ++KHAD+  +   +  S+ DHI+  L DN   +D  N   ++ +KY
Sbjct: 299 VSKRLSKNVQKHADIVMLAKSKLSSTDDHISKALTDNQISSDEFNLIIKEAEKY 352


>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
          Length = 677

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -2

Query: 137 QLHQNSYLSNQHA----SSTILKSLSLGTPTKXGCELYT 33
           QL+ +  LS QH     S+++   LSL TPT     LYT
Sbjct: 207 QLYPDQSLSQQHHTPSFSASVFSRLSLATPTHSPLRLYT 245


>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
          Length = 493

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 167 LGDNTRVTDGVNCRYRKQKYEISCWKLGN 253
           +G  T   DG +C+Y+K K + +C K+G+
Sbjct: 46  IGPETAEHDGKSCKYKKYKCD-NCGKVGH 73


>SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 271 SKPKCPITQLPTGYFVFLLSIPAIDSISHTGIISQFQRDMV 149
           S+P  PI  + T      LS P  DSIS+T +       M+
Sbjct: 130 SQPDAPIQSISTTQIPEHLSQPLADSISNTSVSKHLSHSMM 170


>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 56  WSVYLTKVISK*LRKHADLKDMNFGEAVSSVDHITLKLGDNTR--VTDG 196
           WS+   + ++K L  H +  D N G     VD I +   D+++  +TDG
Sbjct: 132 WSLEADEELAKFLADHMNKMDANLGSISHYVDGIEVSSEDSSKDCLTDG 180


>SB_45701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 195 PSVTRVLSPNFNVIWSTLDTASPKFISFKSACFLNYF 85
           PS   V     N+I   LD   P  + F +AC+L YF
Sbjct: 171 PSRLPVTDEVTNIIHYHLDLGLPDHLIFWAACYLAYF 207


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 219 CFLYLQ-LTPSVTRVLSPNFNVIWST-LDTASPKFISFKSACFLN 91
           C L+ Q L P  T +L+PNF+++    +DT S    +  S C L+
Sbjct: 710 CNLHCQTLQPDGTCILAPNFDIVGGVCVDTPSTPTTAPYSGCELH 754


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 68  LTKVISK*LRKHADLKDMNFGEAVSSVDHITLKLGDNTRVTD 193
           ++K +SK ++KHAD+  +      +  DHI+  L DN   +D
Sbjct: 618 VSKRLSKNVQKHADIVMLAKSRLSTIDDHISKALTDNQISSD 659


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 258 VPLPSFQQDISYFCFLYLQLTPSVTRVLS 172
           VPLP   +DI     LY Q +P    VLS
Sbjct: 42  VPLPQSPRDIGTRLLLYTQASPDKYEVLS 70


>SB_9740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 243 FQQDISYFCFLYLQLTPSVTRVLSPNFN 160
           F  ++ YF  LY+Q+T    +V S N N
Sbjct: 202 FLNELIYFLLLYMQITEDQIQVWSSNPN 229


>SB_29927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 68  LTKVISK*LRKHADLKDMNFGEAVSSVDHITLKLGDNTRVTDGVNCRYRK-QKY 226
           ++K +SK ++KHAD+  +   +  S  D I+  L D    +DG N   ++ +KY
Sbjct: 758 VSKRLSKNVQKHADIVMLAKSKLSSIGDLISKALTDKQISSDGFNLIIKEAEKY 811


>SB_52790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 210 IESRNTKYPVGSW--VMGHFGLE 272
           + SRNT+Y +G+W  VM  F  E
Sbjct: 232 LSSRNTQYVIGNWSGVMATFTFE 254


>SB_49376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 101 HADLKDMNFGEAVSSVDHITLKLGD 175
           + +L++M F EA+  + H+++ LGD
Sbjct: 107 NGELENMLFKEAIECLTHLSVLLGD 131


>SB_53054| Best HMM Match : NHase_beta (HMM E-Value=3.6)
          Length = 322

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 28  EKVYSSQPHLVGVPNESDFKIVEEAC 105
           + VYSS+PH +G+ +     IV   C
Sbjct: 212 DHVYSSRPHHIGLSDHLPVGIVRRYC 237


>SB_48060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 101 HADLKDMNFGEAVSSVDHITLKLGD 175
           + +L++M F EA+  + H+++ LGD
Sbjct: 107 NGELENMLFKEAIECLTHLSVLLGD 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,693,088
Number of Sequences: 59808
Number of extensions: 149811
Number of successful extensions: 313
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)