Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M08
         (279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   6.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   8.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   8.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 49  PHLVGVPNESDFKIVEEAC 105
           PH++G   ++ +++V +AC
Sbjct: 341 PHMLGGRTDTTYRVVCDAC 359


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 162 NVIWSTLDTASPKFISFKSACFLNYFEITF 73
           +V W  L+  + +   F + C   Y +ITF
Sbjct: 207 SVEWDILEVPAVRNEKFYTCCDEPYLDITF 236


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 162 NVIWSTLDTASPKFISFKSACFLNYFEITF 73
           +V W  L+  + +   F + C   Y +ITF
Sbjct: 207 SVEWDILEVPAVRNEKFYTCCDEPYLDITF 236


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 162 NVIWSTLDTASPKFISFKSACFLNYFEITF 73
           +V W  L+  + +   F + C   Y +ITF
Sbjct: 203 SVEWDILEVPAVRNEKFYTCCDEPYLDITF 232


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 146 VDHITLKLGDNTRV 187
           V+HI+ ++GDN  +
Sbjct: 317 VNHISARVGDNVEI 330


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 165 NWEIIPV*LMESIAGIESRNTKYPV 239
           N+ +I V   + I  I  RN++YP+
Sbjct: 101 NFPMISVFSRQDIETIIRRNSRYPL 125


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 176 NTRVTDGVNCRYRKQKY 226
           NTR+   +NC  R +K+
Sbjct: 133 NTRLQATLNCGLRLEKF 149


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 235 GYFVFLLSIPAI 200
           GYFVF   +P+I
Sbjct: 242 GYFVFQTYLPSI 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,544
Number of Sequences: 438
Number of extensions: 1617
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)