Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M08
(279 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78810.2 68414.m09186 expressed protein 30 0.26
At1g78810.1 68414.m09185 expressed protein 30 0.26
At1g60410.1 68414.m06801 F-box family protein contains F-box dom... 29 0.35
At2g35790.1 68415.m04392 expressed protein 29 0.61
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 27 1.4
At4g18310.1 68417.m02716 hypothetical protein 27 1.4
At3g13890.1 68416.m01755 myb family transcription factor (MYB26)... 27 2.4
At3g18240.2 68416.m02321 expressed protein 26 3.2
At3g18240.1 68416.m02320 expressed protein 26 3.2
At1g77220.1 68414.m08994 expressed protein contains Pfam profile... 26 4.3
At1g31814.1 68414.m03906 expressed protein 26 4.3
At3g31990.1 68416.m04051 hypothetical protein similar to putativ... 25 5.7
At5g23650.1 68418.m02773 myb family transcription factor contain... 25 7.5
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ... 25 7.5
At3g27390.1 68416.m03424 expressed protein 25 7.5
At2g32910.1 68415.m04035 expressed protein 25 7.5
At2g31180.1 68415.m03807 myb family transcription factor (MYB14)... 25 7.5
At5g06350.1 68418.m00711 expressed protein 25 9.9
At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR ... 25 9.9
>At1g78810.2 68414.m09186 expressed protein
Length = 480
Score = 29.9 bits (64), Expect = 0.26
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 246 SFQQDISYFCFLYLQLTPSVTRVLSPNFNVIWSTLDTASPKFI 118
S +Q++ Y L+ Q P+ + SPNFN+I + P +I
Sbjct: 9 SLKQEVIYLHSLWHQGPPTRKPIPSPNFNLIHDPIQRPRPNYI 51
>At1g78810.1 68414.m09185 expressed protein
Length = 481
Score = 29.9 bits (64), Expect = 0.26
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 246 SFQQDISYFCFLYLQLTPSVTRVLSPNFNVIWSTLDTASPKFI 118
S +Q++ Y L+ Q P+ + SPNFN+I + P +I
Sbjct: 9 SLKQEVIYLHSLWHQGPPTRKPIPSPNFNLIHDPIQRPRPNYI 51
>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
Pfam:PF00646
Length = 406
Score = 29.5 bits (63), Expect = 0.35
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 186 TRVLSPNFNVIWSTLDTASPKFISFKSACFLNYFEITFVRYTDQMXL 46
T VLSP ++ +WS + F FK + F +F+ Y +++ L
Sbjct: 35 TSVLSPRWSNLWSLVSVLDLDFQDFKGEHDMGEFIDSFMEYHEELGL 81
>At2g35790.1 68415.m04392 expressed protein
Length = 238
Score = 28.7 bits (61), Expect = 0.61
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 219 CFLYLQLTPSVTRVLSPNFNVIWSTLDTASPKFISFKSACFLNYFEITFV 70
C L + L P +T + SP NVI ++ F+S + L++F +V
Sbjct: 107 CCLSVSLGPVITFMTSPGLNVIMKGAVASTVIFLSASTTAALHWFVSPYV 156
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 197 LHQSHGYYLPIST*YGQR*TQLHQNSYLSNQHASS 93
LH+S GYY P T Y + + + Y S++ S
Sbjct: 610 LHESSGYYYPDETGYNEEDEETREYYYGSDEEGGS 644
>At4g18310.1 68417.m02716 hypothetical protein
Length = 210
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 192 SVTRVLSPNFNVIWSTLDTASPKFISFKSACFLNYFEITF 73
SVTR+ + N V+ ST+D+ SP + + F+ TF
Sbjct: 97 SVTRIPTHNLPVVGSTIDSISPSADKISIIGWGHSFDFTF 136
>At3g13890.1 68416.m01755 myb family transcription factor (MYB26)
similar to myb-related transcription factor GI:1167486
from [Lycopersicon esculentum]; contains myb DNA binding
domain: PF0049
Length = 367
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 197 LHQSHGYYLPIST*YGQR*TQLHQNSYLSNQHASSTILKSLSLGTPTKXG 48
+ Q HG +LP + + T HQ+ + + + + I+ S S +P G
Sbjct: 313 ISQDHGLFLPTTYNFQMTSTSDHQHHHRVDSYINHMIIPSSSSSSPISCG 362
>At3g18240.2 68416.m02321 expressed protein
Length = 419
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 219 CFLYLQLTPSVTRVLSPNFNVIWSTLDTASPKFISFKS 106
C + L+P +T +SPN + A+PKF F S
Sbjct: 12 CARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSS 49
>At3g18240.1 68416.m02320 expressed protein
Length = 419
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 219 CFLYLQLTPSVTRVLSPNFNVIWSTLDTASPKFISFKS 106
C + L+P +T +SPN + A+PKF F S
Sbjct: 12 CARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSS 49
>At1g77220.1 68414.m08994 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 484
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 165 FNVIWSTLDTASP--KFISFKSACFLNYFEITFVRYTDQMXL 46
+NVI L P KF++FKS FL +++ V + M L
Sbjct: 242 YNVIKDKLAPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSMGL 283
>At1g31814.1 68414.m03906 expressed protein
Length = 473
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 180 VLSPNFNVIWSTLDTASPKFISFKSACF 97
+LSP+FN+ WS +D+ F S +S+ F
Sbjct: 34 LLSPSFNLSWSEIDS---HFSSLQSSLF 58
>At3g31990.1 68416.m04051 hypothetical protein similar to putative
replication protein A1 GB:AAD32756 from [Arabidopsis
thaliana]
Length = 450
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 271 SKPKCPITQLPTGYFVFLLSIPAIDSIS 188
SKPK + +LPTG F + I +S
Sbjct: 192 SKPKSEVAELPTGDFYLQFAKKTIKEVS 219
>At5g23650.1 68418.m02773 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 337
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 35 YIVHNXIWSVYLTKVISK*LRKH 103
Y HN IW+ T+VIS+ + H
Sbjct: 230 YGTHNNIWNAQATQVISQPSQNH 252
>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 295
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 104 HASSTILKSLSLGTPTKXGCE 42
H+SS + +LSLGTP+ CE
Sbjct: 62 HSSSLVDCTLSLGTPSTRLCE 82
>At3g27390.1 68416.m03424 expressed protein
Length = 588
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 153 WSTLDTASPKFISFKSACFLNYFEI 79
WST+ + FK CF +YF +
Sbjct: 136 WSTMQRSFTVVRDFKDVCFHSYFSL 160
>At2g32910.1 68415.m04035 expressed protein
Length = 691
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 273 PPSRNVPLPSFQQDISYFCFLYLQLTPSVTRVLSP 169
PP V L S+++D Y C + P T ++SP
Sbjct: 602 PPDSAVTLDSYRRDPYYICERHALERPPRTYMVSP 636
>At2g31180.1 68415.m03807 myb family transcription factor (MYB14)
similar to myb-related transcription factor GI:1370140
from [Lycopersicon esculentum]
Length = 249
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 53 IWSVYLTKVISK*LRKHADLKDMN 124
+W +L K +SK L D KD+N
Sbjct: 107 VWHTHLKKRLSKNLNNGGDTKDVN 130
>At5g06350.1 68418.m00711 expressed protein
Length = 890
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 270 PSRNVPLPSFQQDISYFCFLYLQLT 196
PS+N L +++QD + C LY LT
Sbjct: 241 PSQNETLLTYEQDATKDCVLYSILT 265
>At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR
class), putative similar to diesease resistance protein
rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631
Length = 1138
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 246 SFQQDISYF--CFLYLQLTPSVTRVLSPNFNVIWSTLDTASPK 124
SF++ SY CFLYL P + N + W+ + P+
Sbjct: 420 SFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEEIFQPR 462
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,172,085
Number of Sequences: 28952
Number of extensions: 114770
Number of successful extensions: 338
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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