Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M07
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 28 0.98
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 27 2.3
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 27 3.0
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 26 4.0
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 4.0
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 26 4.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 5.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 6.9
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 6.9
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 9.1
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 28.3 bits (60), Expect = 0.98
Identities = 10/46 (21%), Positives = 26/46 (56%)
Frame = +3
Query: 315 DTDNDGFVTLVELKDWIRYTQKRYIDDDVERHWKQHNPSNEPSIPW 452
D DN G++ + D+++ ++ D++V+ ++ +P+N S +
Sbjct: 88 DKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDY 133
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 273 EESKRRLGIIVDKIDTDNDGFVTLVELKDWIRYTQKRYIDDDVE 404
++S LG I+D +DTD D V E +R Y DD+ E
Sbjct: 331 QDSLESLGPIIDDMDTDMDSEVG-KEASRGVRLDDFYYFDDEEE 373
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 195 EHHNKQFDHDAFLGEDQAKTFDQLPPEESKRRLGIIVDKIDTDNDGFVTLV 347
E +++QF + L E ++ +E + + K D DGFVT+V
Sbjct: 136 ESYDRQFVNPRVLAESVDSYMKRVTKKEIAEKRRLFAMKNQPDEDGFVTVV 186
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 426 GCVASSASRRHRRCIVSECTVSSLLVRLAS 337
GCV S ++ I S CT+S++L+ + S
Sbjct: 251 GCVKSGDLNLNKALIYSTCTISAVLLLIVS 280
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 317 IDFVDYYSKSSLTLFR 270
+DFVDY++KSS +F+
Sbjct: 665 VDFVDYWTKSSSEIFK 680
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 426 GCVASSASRRHRRCIVSECTVSSLLVRLAS 337
GCV S ++ I S CT+S++L+ + S
Sbjct: 218 GCVKSGDLNLNKALIYSTCTISAVLLLIVS 247
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 219 HDAFLGEDQAKTFDQLPPEESKRRLGIIVDKI 314
H G +QA D PP K+ L +VDKI
Sbjct: 148 HRPAAGNEQALPSDVRPPPVLKKSLDYLVDKI 179
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 399 VERHWKQHNPSNEPSIP 449
++ HWK+H+ SN P+ P
Sbjct: 1 MDPHWKRHDSSNIPTQP 17
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 150 KRMMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAK---TFDQLPPEESKRRLGIIVDKI 314
+R+ +HL +++ +H NK+ D + E++ K ++ PE K+ G +K+
Sbjct: 179 QRLAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKV 236
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 175 SDK*SIIRFVSSGLGTPANTAETAKATN 92
SD S++ + SGL TPAN + N
Sbjct: 580 SDSLSLLTLLKSGLPTPANDLQNKSQNN 607
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,455
Number of Sequences: 5004
Number of extensions: 54025
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -