Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M07
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.6  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 486 LYSLCGKINSHPRG*TARCLGCVASSASRRHRRCIVSECTV 364
           L+  C    S  +G T+ CLGC  S    ++   + S C +
Sbjct: 18  LFDKCSGYPSIRQGTTSYCLGCGDSCHKCKYGIAMSSACGI 58


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 387 CIVSECTVSSLLVRLASRTRRCPY 316
           C+V E T+ SL     + + +CPY
Sbjct: 614 CVVVEETIPSLNSTNVTLSTKCPY 637


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 396 DVERHWKQHNPSNEPSI 446
           D E+H++QH  S  P +
Sbjct: 723 DTEQHFRQHRDSLSPRV 739


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 180 EHYRNEHHNKQFDHDAFLGE 239
           E++ + +  K FD +  LGE
Sbjct: 414 EYFEHRYQGKFFDEELILGE 433


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 180 EHYRNEHHNKQFDHDAFLGE 239
           E++ + +  K FD +  LGE
Sbjct: 382 EYFEHRYQGKFFDEELILGE 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,389
Number of Sequences: 438
Number of extensions: 3552
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)