Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M06
(490 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 187 4e-48
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 31 0.51
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07) 29 2.7
SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 27 6.3
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2) 27 8.3
SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09) 27 8.3
SB_55065| Best HMM Match : ChaB (HMM E-Value=4.2) 27 8.3
SB_9070| Best HMM Match : TPR_1 (HMM E-Value=2.7e-39) 27 8.3
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 187 bits (456), Expect = 4e-48
Identities = 85/119 (71%), Positives = 101/119 (84%)
Frame = +1
Query: 19 MADVDVEVPANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 198
M+D + + +GGAMD+NTALQEVLKTALIH GL GLHEAAK+LDKR+A LC+L+
Sbjct: 1 MSDAEGDDTTQQPAAGGAMDINTALQEVLKTALIHDGLSRGLHEAAKSLDKREAHLCILS 60
Query: 199 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 375
NCDEA Y KLV+ALC EH IPL+KVD++KKLGEWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 61 NNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLGEWAGLCKIDKEGKARKVVGCSCVVVK 119
>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 166 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 309
D LCVL EN D + +L++A C E+ IP+VKVD+++KL AG
Sbjct: 2 DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53
>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 166 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 309
D LCVL EN D + +L++A C E+ IP+VKVD+++KL AG
Sbjct: 2 DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 136 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 300
+G++ ++ ++A L V+A + D + ALC + Q+P V +LG+
Sbjct: 47 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 101
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 136 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 300
+G++ ++ ++A L V+A + D + ALC + Q+P V +LG+
Sbjct: 138 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 192
>SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)
Length = 564
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 478 GFFIYKLITLHLGINLK 428
GF++YKL LH G+N K
Sbjct: 447 GFYVYKLRELHFGVNAK 463
>SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 742
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +1
Query: 142 LHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK----LGEWAG 309
LH+ LD A + +L N + Q L P+ DN + + ++ G
Sbjct: 363 LHQRGVNLDTTTANMTILTSNIIQQLNNVSFQGLTG----PVSFTDNQRNGIIAIKQFQG 418
Query: 310 LCKIDKDGKARKIVGC 357
+ +DK K R ++GC
Sbjct: 419 MAPLDKPAKIRLVIGC 434
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 124 GGLVHGLHEAAK--ALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQI 261
G L LHE +K +L R A+ C ++E + +++V N H I
Sbjct: 167 GSLHFVLHETSKEISLPDRVAIFCDVSEGLEFLKSRRIVHCFLNSHSI 214
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +2
Query: 245 VMNIKSHLLRSITIRSSANGPVSVKSTKTARLGKSSVALA*LSRISVRRRQRWTYSKTTS 424
V NIK + R +++ + V +++ KT +S V ++ L +S RR++R+T +
Sbjct: 477 VTNIK--VQRQNSVKRREDKIVDLETRKTNSFTRSHVCVSGLKSMSKRRKERYTTCRAVP 534
Query: 425 SLQ 433
+Q
Sbjct: 535 IIQ 537
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 ANPVLSGGAMDVNTALQEV-LKTALIHG-GLVHGLHEAAKALDKRQ 177
A VL GGA+DVN AL+ + + TA + G G V G+ ++ Q
Sbjct: 515 ARVVLPGGAVDVNQALETLKVMTASMSGEGCVVGIRNLPSSITADQ 560
>SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2)
Length = 401
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 310 DRPIRRASYCYRP*QVGFD-VHYREPEQAFCRLPRHSSQPV 191
DRP RR YCY Q +D + R+ + +PR PV
Sbjct: 38 DRPFRRIIYCYAEPQPAYDLMAKRDGGRVPPWVPRERGDPV 78
>SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)
Length = 330
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 94 QEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 234
+ +L+ +G ++ L A + R LCV A CDE ++ LV
Sbjct: 70 KSLLQQPCPNGRVILSLAVADLCIGLRLEALCVFAARCDEMTWRVLV 116
>SB_55065| Best HMM Match : ChaB (HMM E-Value=4.2)
Length = 221
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 310 DRPIRRASYCYRP*QVGFD-VHYREPEQAFCRLPRHSSQPV 191
DRP RR YCY Q +D + R+ + +PR PV
Sbjct: 38 DRPFRRIIYCYAEPQPAYDLMAKRDGGRVPPWVPRERGDPV 78
>SB_9070| Best HMM Match : TPR_1 (HMM E-Value=2.7e-39)
Length = 278
Score = 27.1 bits (57), Expect = 8.3
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Frame = +1
Query: 124 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEW 303
GGL L + KA++ + LC+ + +E +K N + DN + + +
Sbjct: 108 GGLYSSLGDNGKAMENYKNALCIFEKLGEE---RKQADVYSNIGAVFKSLGDNGQAMENY 164
Query: 304 A-GLCKIDKDGKARK---IVGCSCVVIKDFGEETPALDVLKDYL 423
LC +K G+ RK + V K G+ A++ K+ L
Sbjct: 165 KHALCIYEKFGEERKQADVYSNIGAVFKSLGDNGQAMENYKNAL 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,545
Number of Sequences: 59808
Number of extensions: 312354
Number of successful extensions: 726
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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