Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M05
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   1.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   1.2  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    27   1.6  
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   8.7  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   8.7  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +2

Query: 143  SRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD-- 316
            S + +++G++ +  +GT G    +   G    K S    +++ + + + AA   ++ +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 317  -NVNRHGATLTNTHIPGIGD*LSVAGKV 397
              + +HG T+   HI  +GD ++  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 185 DGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPG 364
           D +SGA++ V  T     +    GS+  T+ I     T+G V + V     T+T T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTV-EVVEPTAGTVTETIISG 850


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 382 RQLISNSRNMSVCEGSSVAVDIIVN*SSCSG 290
           +QL+  ++ + VC  S++AVD IV+  S SG
Sbjct: 247 QQLVLRNKRILVCGASNLAVDNIVDRLSSSG 277


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 424 IMVVVMKQVHFTSNRQLISNSRNMSVCEGSSVAV 323
           I  V +  + F ++      S N+SV EGSS+ +
Sbjct: 73  IYAVCLMNIFFRNSENCFKYSMNLSVAEGSSILI 106


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 429 PRRRSRPEICPPFPI 473
           PRRR RP   PP PI
Sbjct: 100 PRRRGRPRKYPPKPI 114


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 7/32 (21%), Positives = 20/32 (62%)
 Frame = +2

Query: 398 NLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 493
           ++ H + H L++ +F+T+ + T   + ++ T+
Sbjct: 431 SILHRHAHSLTSSSFSTKTLATTKEIQNSPTL 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,549
Number of Sequences: 5004
Number of extensions: 38386
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)