Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M05
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    33   0.15 
At5g43990.1 68418.m05383 SET domain-containing protein identical...    33   0.15 
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    27   7.3  
At5g40480.1 68418.m04909 expressed protein ; expression supporte...    27   9.7  
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    27   9.7  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    27   9.7  
At3g05150.1 68416.m00559 sugar transporter family protein simila...    27   9.7  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 137 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD 316
           ++  V  +AGE    +DGT+  +    +    +HKL+A  +++    ++L ++ +G V  
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276

Query: 317 NVNRHGAT-LTNTHIPGI 367
           N++   AT  +N H+P +
Sbjct: 277 NLSFAPATGGSNPHLPSM 294


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 137 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD 316
           ++  V  +AGE    +DGT+  +    +    +HKL+A  +++    ++L ++ +G V  
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253

Query: 317 NVNRHGAT-LTNTHIPGI 367
           N++   AT  +N H+P +
Sbjct: 254 NLSFAPATGGSNPHLPSM 271


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 395 VNLFHNNDHDLSAKAFATRNMPTISHL 475
           ++L + + H+L  KAF+   MP +SHL
Sbjct: 281 LDLSNRSIHNLVNKAFSVHEMPLLSHL 307


>At5g40480.1 68418.m04909 expressed protein ; expression supported by
            MPSS
          Length = 1919

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 275  QIKLGAATAGLVYDNVNRHGATLTNTHIPGIGD*LSVAGKVNLFHNNDH 421
            Q K+       +Y  V+  G TLTN H+P  G    V  + N F   +H
Sbjct: 1597 QTKVTVLFGNTIY--VDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEH 1643


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 138 PVPGCAGKRVNL 173
           PVPGC GK VNL
Sbjct: 15  PVPGCLGKMVNL 26


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 138 PVPGCAGKRVNL 173
           PVPGC GK VNL
Sbjct: 15  PVPGCLGKMVNL 26


>At3g05150.1 68416.m00559 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 470

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 239 KLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPGIG 370
           + S  GS+ L     LGA T+G + D + R GA   ++ I  IG
Sbjct: 73  QFSVFGSI-LNMGAVLGAITSGKISDFIGRKGAMRLSSVISAIG 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,110
Number of Sequences: 28952
Number of extensions: 209122
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)