Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M04
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       75   6e-15
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          30   0.17 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   6.4  

>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 74.9 bits (176), Expect = 6e-15
 Identities = 45/103 (43%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
 Frame = +3

Query: 159 LIPELCKQFYHLGWVTGTGGGISIKEGDRIYIAPSGVQKERMKSDDLFVQTIHDVDXXXX 338
           LI E+C+  Y  GWVTGTG        D I IAPSGVQKERM+   LFV ++   +    
Sbjct: 23  LICEICRDLYTSGWVTGTG--------DAIVIAPSGVQKERMELHHLFVMSLITRE-YMR 73

Query: 339 XXXXXXXXSQCTPLFMLAYI-MRNAGSVIHTHSPHAVRCTLLY 464
                   SQCTPLF+  Y  +R+A + IHTHS  A+  + L+
Sbjct: 74  MPALRLKPSQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTLF 116


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 153 RNLIPELCKQFYHLGWVT-GTGGGISIKE 236
           +NLI EL   FY LGW+  G+G  I +K+
Sbjct: 7   KNLILELIPHFYSLGWMKFGSGYAICVKD 35


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 228 IKEGDRIYIAPSGVQKERMKSDDLFVQT 311
           +KE D IYI  +G   E+   + LFV T
Sbjct: 768 LKEADSIYILSNGKIVEKGNYEHLFVST 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,507
Number of Sequences: 5004
Number of extensions: 41147
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)