Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M04
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...    90   1e-18
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    28   3.7  
08_01_0083 - 604175-605776                                             27   6.4  
10_08_1043 + 22524322-22524346,22524931-22525028,22525287-225253...    27   8.5  
04_04_0256 + 23974297-23974387,23974824-23974942,23975619-239764...    27   8.5  

>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 14/126 (11%)
 Frame = +3

Query: 153 RNLIPELCKQFYHLGWVTGTGGGISIKEGD--------RIYIAPSGVQKERMKSDDLFVQ 308
           R L+ ELC+ FY  GWVTGTGG I++K  D         I ++PSGVQKERM ++D++V 
Sbjct: 30  RELVAELCRHFYGQGWVTGTGGSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVL 89

Query: 309 T----IHDVDXXXXXXXXXXXXSQCTPLFMLAYIMRNAGSVIHTHSPHAVRCTLLYD--K 470
           +    +                + C PLFM AY+MR AG+VIH+H       T+L    K
Sbjct: 90  SADGKVLSSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATMLDPGAK 149

Query: 471 EFVITH 488
           EF +TH
Sbjct: 150 EFRMTH 155


>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
            48730-48840,48935-49195,49415-49638,49735-49855,
            50673-51214,51302-51488,51569-51895,52047-52197,
            52287-52424,52918-53013,53276-53357,54411-54679,
            54769-54882,55050-55288,55488-55715,55799-55951,
            56479-56616,57061-57188,57598-57718,58142-58306,
            59486-59633,59772-59898,60025-60118,60119-60268,
            60577-60624,60712-60819,61040-61114,61225-61275,
            61341-61487,61584-61714,61944-62031,62204-62266,
            62336-62582,62830-62981,63056-63126,63214-63370,
            63520-63687
          Length = 2323

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = -1

Query: 363  SSSIFSQAVVVLNQHRE*FVQINHQTSFFPFALLMELYRSYHPPL*RFHRLCRLPILS 190
            SS +F  A ++L+  RE  VQINH    FP   +M    S+H  L  F +L    +LS
Sbjct: 1919 SSYVFIAANLILHS-RELAVQINHLNELFP--PIMPFLTSHHHSLRGFTQLLVHCVLS 1973


>08_01_0083 - 604175-605776
          Length = 533

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 361 RANVLRYSCSLIS*GMPDPLYTHTLRT 441
           R N+LRY  S ++ G   P Y  T+RT
Sbjct: 504 RRNMLRYGVSFVADGAGGPRYIFTVRT 530


>10_08_1043 +
           22524322-22524346,22524931-22525028,22525287-22525384,
           22525878-22525935,22526642-22526743,22526840-22526901,
           22527441-22527519,22527669-22527788,22527869-22527982,
           22528749-22528883
          Length = 296

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 372 YIGSSSIFSQAVVVLNQHRE*FVQINHQTSFFPFALLMELYRS 244
           Y+G+ SIF      L Q     +  NHQT   P  + + L RS
Sbjct: 77  YVGNISIFQDMEQKLQQGHNVVLMSNHQTEADPAIIALLLERS 119


>04_04_0256 +
           23974297-23974387,23974824-23974942,23975619-23976437,
           23976626-23976781,23976878-23977252
          Length = 519

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 499 SSLWCVITNSLS*SKVHLTACGECVCITDPAFLMI*ASMN 380
           + L C+++NSL+   + L  C   +C+  P  L   +S+N
Sbjct: 234 AELECLLSNSLALEHLELNHCKGIICLKIPCTLQQLSSLN 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,930,886
Number of Sequences: 37544
Number of extensions: 246815
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)