Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M04
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23231| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_7388| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.13 
SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095)                    29   2.8  
SB_12253| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_23231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 144 EHPRNLIPELCKQFYHLGWVTGTGGGISIK 233
           EHPRNLIP LC++FY+LGW TGTGG  +IK
Sbjct: 1   EHPRNLIPALCREFYNLGWFTGTGGAFTIK 30


>SB_7388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = +3

Query: 408 AGSVIHTHSPHAVRCTLLYDK--EFVITHQR 494
           AG+VIH+HS +AV  +LL  +  EF ITHQ+
Sbjct: 2   AGAVIHSHSKYAVMVSLLDQEATEFRITHQQ 32


>SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095)
          Length = 486

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 414 SVIHTHSPHAVRCTLLYDKEFVITHQR 494
           SVIH  + H + C +   K+F++ HQ+
Sbjct: 192 SVIHYDADHNIHCMMAGRKDFIMIHQK 218


>SB_12253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +2

Query: 308 NYSRC*FRTTTA*EKIEEEPMY---SAIHAR--LYHEECRIRYTHTLSA 439
           N SRC   TT+   KI+E+ +    S +H    L H+E  I Y H LSA
Sbjct: 113 NKSRCIQGTTSLVVKIQEDRLLGLLSLLHKFRVLEHQEITISYLHMLSA 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,689
Number of Sequences: 59808
Number of extensions: 308320
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)