Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M04
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical pr...    75   2e-14
AF078785-6|AAC27094.1|  337|Caenorhabditis elegans Serpentine re...    29   1.9  

>Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical
           protein ZC373.5 protein.
          Length = 263

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
 Frame = +3

Query: 168 ELCKQFYHLGWVTGTGGGISIKEGDRIYIAPSGVQKERMKSDDLFVQTIHDVDXXXXXXX 347
           EL  QFY LGW+ G+GG +    G  + I+PS +QKER++  D+FV  + D         
Sbjct: 35  ELMIQFYKLGWMRGSGGAMGCISGSELMISPSALQKERIREQDVFVYNMKDKTEVQRPPN 94

Query: 348 XXXXXSQCTPLFMLAYIMRNAGS--VIHTHSPHAVRCT-LLYDKEFVITHQ 491
                S C+ LF L  IM+  GS  VIHTHS  A   T L+    F I+HQ
Sbjct: 95  KRITVSSCSVLFSL--IMKETGSECVIHTHSKCANLITQLIKSNVFEISHQ 143


>AF078785-6|AAC27094.1|  337|Caenorhabditis elegans Serpentine
           receptor, class x protein121 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 52  TDKKVYTVLYCTVRRNIQALITIIKCLNLGQNTQGILYLNCASSF 186
           T   V  +L CTVR  I  LI I   L + +   G L + C +SF
Sbjct: 22  TVSAVMLILVCTVRSTINVLIFISTLLRISKR-DGFLKICCFNSF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,323
Number of Sequences: 27780
Number of extensions: 228182
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)