Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M04
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase fa...    89   2e-18
At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase fa...    89   2e-18
At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase fa...    72   2e-13
At2g44600.1 68415.m05552 expressed protein                             30   1.0  
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    28   3.1  
At2g17525.1 68415.m02027 pentatricopeptide (PPR) repeat-containi...    28   3.1  
At3g18110.1 68416.m02303 pentatricopeptide (PPR) repeat-containi...    27   7.1  
At3g47560.2 68416.m05178 esterase/lipase/thioesterase family pro...    27   9.4  
At3g47560.1 68416.m05177 esterase/lipase/thioesterase family pro...    27   9.4  

>At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 507

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 14/125 (11%)
 Frame = +3

Query: 156 NLIPELCKQFYHLGWVTGTGGGISIKEGDR--------IYIAPSGVQKERMKSDDLFVQT 311
           +L+ ELC+ FY  GWV+GTGG I++K  D         I ++PSGVQKERM+ +D+++ +
Sbjct: 26  SLVTELCRHFYTQGWVSGTGGSITMKVHDASIPKPEQLIVMSPSGVQKERMQPEDMYILS 85

Query: 312 ----IHDVDXXXXXXXXXXXXSQCTPLFMLAYIMRNAGSVIHTHSPHAVRCTLL--YDKE 473
               I                + C PLFM AY MRNAG+VIH+H   +   T+L    KE
Sbjct: 86  ANGSIISTPSPKPYPNKPPKCTDCAPLFMKAYEMRNAGAVIHSHGMESCLVTMLNPQAKE 145

Query: 474 FVITH 488
           F ITH
Sbjct: 146 FRITH 150


>At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 402

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 14/125 (11%)
 Frame = +3

Query: 156 NLIPELCKQFYHLGWVTGTGGGISIKEGDR--------IYIAPSGVQKERMKSDDLFVQT 311
           +L+ ELC+ FY  GWV+GTGG I++K  D         I ++PSGVQKERM+ +D+++ +
Sbjct: 26  SLVTELCRHFYTQGWVSGTGGSITMKVHDASIPKPEQLIVMSPSGVQKERMQPEDMYILS 85

Query: 312 ----IHDVDXXXXXXXXXXXXSQCTPLFMLAYIMRNAGSVIHTHSPHAVRCTLL--YDKE 473
               I                + C PLFM AY MRNAG+VIH+H   +   T+L    KE
Sbjct: 86  ANGSIISTPSPKPYPNKPPKCTDCAPLFMKAYEMRNAGAVIHSHGMESCLVTMLNPQAKE 145

Query: 474 FVITH 488
           F ITH
Sbjct: 146 FRITH 150


>At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 418

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 52/141 (36%), Positives = 71/141 (50%), Gaps = 30/141 (21%)
 Frame = +3

Query: 156 NLIPELCKQFYHLGWVTGTGGGISIKEGDR--------IYIAPSGVQKERMKSDDLFV-- 305
           +L+ ELC+ FY  GWV+GTGG I++K  D         I ++PSGVQKERM+ +D+++  
Sbjct: 26  SLVTELCRHFYTQGWVSGTGGSITMKVHDASIPKPEQLIVMSPSGVQKERMQPEDMYILS 85

Query: 306 --QTIHDVDXXXXXXXXXXXXSQCTPLFM----------------LAYIMRNAGSVIHTH 431
              +I                + C PLFM                 AY MRNAG+VIH+H
Sbjct: 86  ANGSIISTPSPKPYPNKPPKCTDCAPLFMKNRRLSLGKRLRKLGYKAYEMRNAGAVIHSH 145

Query: 432 SPHAVRCTLL--YDKEFVITH 488
              +   T+L    KEF ITH
Sbjct: 146 GMESCLVTMLNPQAKEFRITH 166


>At2g44600.1 68415.m05552 expressed protein
          Length = 313

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 75  TVLYSTA*HSSFNNNNKMSELGPE---HPRNLIPELCKQFYHLGWVTGTGGGISIKEGDR 245
           T+  STA   + +N+++ S + P     PR++ P +  +    G  TG GG  S+   + 
Sbjct: 27  TLAVSTAASENDDNDHRHSRISPPPLLFPRSVSPYVAPRKSDAGTGTGAGGRDSVASSNN 86

Query: 246 IYIAPSGVQKERMKSDDLF 302
            + A   V  +   S+ +F
Sbjct: 87  RFFATPQVVVQSSSSEKVF 105


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 31  LRFNPDDTDKKVYTVLYCTVRRNIQALITIIKCLNLGQNTQGILYLNC 174
           LR NP  T K +    +CT RR  + +  +I+C   G   +G LY  C
Sbjct: 50  LRENPKKTQKSLLDHRFCTRRRRNKKI--LIRCKECG---KGFLYEKC 92


>At2g17525.1 68415.m02027 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat; gene
           structure supported by cDNA sequence and Brassica genome
           sequence alignments.
          Length = 626

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 43  PDDTDKKVYTVLYCTVRRNIQALITIIKCLNLG 141
           P+D    +    YC  ++ IQ+++ + KC +LG
Sbjct: 246 PNDVTFNILISAYCNEQKLIQSMVLLEKCFSLG 278


>At3g18110.1 68416.m02303 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile: PF01535 PPR repeat
          Length = 1429

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 43   PDDTDKKVYTVLYCTVRRNIQALITIIKCLNLGQNTQGILYLNCASSF 186
            PD+T      ++YC  RR  +  + + +  NLG + +   Y +  S+F
Sbjct: 960  PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007


>At3g47560.2 68416.m05178 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           Interpro entry IPR000379
          Length = 318

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 345 QAVVVLNQHRE*FVQINHQTSFFPFALLMELYRS 244
           Q +V+LN H E  V + H+T      +L   +RS
Sbjct: 10  QKIVILNSHNENLVGLLHETGSTEIVVLCHGFRS 43


>At3g47560.1 68416.m05177 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           Interpro entry IPR000379
          Length = 265

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 345 QAVVVLNQHRE*FVQINHQTSFFPFALLMELYRS 244
           Q +V+LN H E  V + H+T      +L   +RS
Sbjct: 10  QKIVILNSHNENLVGLLHETGSTEIVVLCHGFRS 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,211
Number of Sequences: 28952
Number of extensions: 205460
Number of successful extensions: 468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)