Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M02
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 185 4e-48
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 29 0.44
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 0.77
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.8
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 2.3
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.1
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 9.5
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 9.5
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 9.5
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 185 bits (450), Expect = 4e-48
Identities = 87/110 (79%), Positives = 101/110 (91%)
Frame = +3
Query: 111 EKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRK 290
+K Q S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PTK+L+ITTRK
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67
Query: 291 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 440
TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 68 TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.44
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 228 KLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 380
K+ +KGP +P KV T ++P S + + F+ H R+I L+S + +
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 28.3 bits (60), Expect = 0.77
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 93 VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVK 242
+S IEKP+A SPIH + +R L+ V GA++ + VK
Sbjct: 891 LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 84 AAVVSGKDIEKPQAEISPIHRIRITLTSRNVRS 182
A V + D+EKPQ +++ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 228 KLRVKGPVRMPTKV---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 398
K R G + P V LR KT G G + ++ R+ DLH E +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842
Query: 399 INIEPGVEVEVTI 437
+ + G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 333 MRIHKRVIDLHSPSEIVKQITSINIEPGV 419
+R+H+R I L + S+ ++ + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 293 CFTCCDAENLGRHSDWTLYTEF 228
C+ C A+NL HS +L+ F
Sbjct: 469 CYLCLYAQNLNSHSSQSLFELF 490
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 344 VDAHLESVPSLGTLTARCFTCCDAENLG 261
+ A L+++ SLG TC AEN G
Sbjct: 52 IQADLKTMTSLGVYGMSAITCLVAENAG 79
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 285 RKTPCGEGSKTWDRFQM 335
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,878
Number of Sequences: 5004
Number of extensions: 47317
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -