Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M01
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    32   0.38 
01_06_0416 - 29195666-29196946                                         28   6.1  
04_03_0955 + 21215380-21215991,21216058-21216639                       27   8.1  
02_05_0911 + 32686737-32686872,32686982-32687017,32687761-32687780     27   8.1  

>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 379 RCQVCEAPTRTIAVHSQSNTVPTCPNGWEELWIGYSFLMHTACADASGQSLIS-PGSCLR 555
           RC +C+    TI      + +  CP  W+  W+    + H+ C   +  S +S    C +
Sbjct: 554 RCVLCDQCEETI-----DHLLVACPESWQLWWVALRAIGHSECLPLNEHSFLSWLCDCRK 608

Query: 556 ESVTDH 573
           + V +H
Sbjct: 609 KMVKEH 614


>01_06_0416 - 29195666-29196946
          Length = 426

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 572 WSVTDSRKHD-PGDIRLCPDASAQAVCIKKL*PIQSSSQPLGQ 447
           W    + +HD P  +RL   A    VC   L  +  S  PLG+
Sbjct: 110 WVTVPAARHDTPSHVRLVRGAGGDRVCALSLSGLAVSGDPLGK 152


>04_03_0955 + 21215380-21215991,21216058-21216639
          Length = 397

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = +1

Query: 283 QREDYSFW-LSTPEPMPMAMTPIQARDVGTY---ISRCQVCEAPTRTIAVHSQSNTVPTC 450
           ++  + +W      P P    P+Q +DVGTY   I+           + ++ +   VP  
Sbjct: 179 KKTSFKYWKCQLLPPPPYLRDPMQMKDVGTYCMDIATHTWSPVGKWMLPLYGKIEYVPEL 238

Query: 451 PNGWEELWIGYSFLMHTACADAS 519
                 LW G+S   H + AD S
Sbjct: 239 -----NLWFGFSDKNHLSAADLS 256


>02_05_0911 + 32686737-32686872,32686982-32687017,32687761-32687780
          Length = 63

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 454 NGWEELWIGYSFLMHTACA 510
           +GW E W G+ F  +T CA
Sbjct: 15  DGWREWWDGFVFACNTPCA 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,242,015
Number of Sequences: 37544
Number of extensions: 346683
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)